LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g0408	ATGTCATTCCAGGTACATCATGATATGAATGCTCCCTTGTCACATTATTTCATGTACACAGGACACAATTCTTACCTAACAAGGAATCAACATACAAGCGAGAGTAGTGATGAGCCAATTATTGAAGCTTTGCAACAAGGTGTTCGAGTAATTGAACTAGATTTATGGCCATCTTCATCTCAAGATGGACGCCTCATAATCCCTTTTGGGAAGAAGCTATCAAGTGTAGCTTCAGGATTTTGGACTTACCATGCTTTGGAATGTGGGTACGACAAATCACTTTGGTATCAGCAGGGGATGTTTAGAGCAAATGGAGGATGTGGTTATGTAAAAAAGCCTAACTTTCTGATGGGGAATCTTCCAAATGAAGAAGAGTTTGATCCTAAAAGAACAATGCCAGTGAAGCAGATATTAAAGGTAAAGGTATACTTAGGAGATGGCTGGAAGTCAGATTTTAGTGCAACACACTTTGATCTTTTCTCCCCACCAGACTTTTACACAAAGGAATTTTATTACCTATAA	522	0.387	MSFQVHHDMNAPLSHYFMYTGHNSYLTRNQHTSESSDEPIIEALQQGVRVIELDLWPSSSQDGRLIIPFGKKLSSVASGFWTYHALECGYDKSLWYQQGMFRANGGCGYVKKPNFLMGNLPNEEEFDPKRTMPVKQILKVKVYLGDGWKSDFSATHFDLFSPPDFYTKEFYYL*	174

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g0408	173	SUPERFAMILY	PLC-like phosphodiesterases	89	128	IPR017946	GO:0006629\|GO:0008081
	Lja6g0408	173	Pfam	Phosphatidylinositol-specific phospholipase C, X domain	9	68	IPR000909	-
	Lja6g0408	173	ProSiteProfiles	Phosphatidylinositol-specific phospholipase Y-box domain profile.	91	116	IPR001711	GO:0004435\|GO:0006629\|GO:0007165\|GO:0035556
	Lja6g0408	173	PANTHER	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN	4	74	IPR001192	GO:0035556
	Lja6g0408	173	PANTHER	PHOSPHOINOSITIDE PHOSPHOLIPASE C	89	168	-	-
	Lja6g0408	173	SMART	plcy_3	41	117	IPR001711	GO:0004435\|GO:0006629\|GO:0007165\|GO:0035556
	Lja6g0408	173	SMART	plcx_3	7	141	IPR000909	-
	Lja6g0408	173	SUPERFAMILY	PLC-like phosphodiesterases	7	74	IPR017946	GO:0006629\|GO:0008081
	Lja6g0408	173	PANTHER	PHOSPHOINOSITIDE PHOSPHOLIPASE C	4	74	-	-
	Lja6g0408	173	PANTHER	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN	89	168	IPR001192	GO:0035556
	Lja6g0408	173	Gene3D	Phosphatidylinositol (PI) phosphodiesterase	79	130	IPR017946	GO:0006629\|GO:0008081
	Lja6g0408	173	Gene3D	Phosphatidylinositol (PI) phosphodiesterase	4	78	IPR017946	GO:0006629\|GO:0008081
	Lja6g0408	173	PRINTS	Phospholipase C signature	38	58	IPR001192	GO:0035556
	Lja6g0408	173	PRINTS	Phospholipase C signature	12	30	IPR001192	GO:0035556
	Lja6g0408	173	ProSiteProfiles	Phosphatidylinositol-specific phospholipase X-box domain profile.	7	75	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g0408	Lja-Chr6	10046642	10048823	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g0408	5	76	Acyl Lipid Metabolism Gene Families	AT2G40116	58.025	5.73e-23	92.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g0408	K05857		-	zju:107413847	194.897

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja6g0408	6	10046642	10048823	Lja6g0408	6	10046642	10048823	ECH
	Lja6g0408	6	10046642	10048823	Lja6g0408	6	10046642	10048823	PCT