Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0404 ATGGCCACTACACACAACTACTCGGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCGCCGAACCGGGTCCACCGCCCGACGTCCAACGAGCTTTCTCCGATTTCGCCGCCGGCGAATCCTTCATGTCCGCCGATCACCTCCTCCGTTTCCTGGTCGAGCACCAGGGCGAGGTTGGTTGCGAGCCATCCGATGTCCAACGGATCCTCTCGGAATTGCCTGAACTGCATCACGAAACTGTGGATTCACGTGGACTCACCCTTCGCCAGTTCTTCCATTTCTTGTTCCTCCATGATTTCAATGGCCCCTTGAAATCCCAGGTACATCATGATATGAATGCTCCATTATCACATTATTTTATATTTACTGGCCACAATTCCTATCTTACTGGGAATCAACTGAGTAGTGACTGCAGTGATGTGCCAATCATAGAGGCTTTGCAACGAGGTGTGCGAGTAATTGAACTAGATTTATGGCCAAATTCAACTGAAGATGACATCGATGTACTTCATGGAAGGACTCTTACCACTCCCGTCTCACTTCTTCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTTGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGTTGCAGAGATGGTAACTCAAATATTTGGAGAATTGCTTTACTATCCTGAGGCAGATTCTCTGATGGAATTCCCCACACCAGAATCATTGAAAGGTAGAATTCTTATATCAACCAAACCACCAAAAGAATATCTTGAATCCAAGCAATGTGATGACAAGGACAATGAAAAGGAATTAGCTGACAAAGAATCATCTTCCCCAGACCTTACTGATGAACTAGAAACTGATGACAAGTGTGCACCTGAATATAAACGCTTGATTACAATCCGTGCTGGAAAACCGAAGGGTGATGTACAGGATGAATTAAAAGTTGTTGGTCAAGTTAGGCGCTTGAGCTTGAGCGAACATGCACTTGAAAAGTGTTCCGAGTCTTACGGAGATGATATTGTTAGGTTTACCCAGACGAATATTCTCAGAGTGTATCCAAAGGGAACCCGCCTCGACTCCTCAAATTACAAGCCACACATAGGGTGGATGTATGGAGCTCAAATGGTTGCATTTAACATGCAGGGGTATGGCAAATCACTCTGGTTCATGCAAGGGATGTTTAGAGCAAATGGAGGGTGTGGTTATGTGAAAAAGCCTGACTTTCTAATTGAAAAAGGTCCACGTAATGAGGTTTTTGATCCTGAAAGAACATTGCCAGTGATGAAAACATTAACGGTGAAAGTCTATATGGGAAGTGGTTGGTGCTCAGATTTCAGCCAAACACACTTCGATACGTACTCACCACCAGATTTATACGTAAAGGTTTGTATTATTGGAGTCCCTGCTGATATAGCCAAGAAGAAAACAGAGGAAATTTCAAATAATTGGTTTCCTGTGTGGAATGAGGAGTTTGATTTCCCTTTGACTGTTCCAGAGCTGGCTCTGCTCCGTATAGATGTTCGAGAGCATGATAGCCATGGAAAAGATGAGTTAGGTGGACAGACGTGTTTGCCTGTCTCGGAGCTGAAATCAGGATTCCGATCAGTCCCTCTGTATGATGAAAAGGGCGACCCATTTAAATCTGTGAAGCTTTTAATGCGGTTTCGGTTTACATGA 1686 0.4371 MATTHNYSVFSCFNRKFTVAEPGPPPDVQRAFSDFAAGESFMSADHLLRFLVEHQGEVGCEPSDVQRILSELPELHHETVDSRGLTLRQFFHFLFLHDFNGPLKSQVHHDMNAPLSHYFIFTGHNSYLTGNQLSSDCSDVPIIEALQRGVRVIELDLWPNSTEDDIDVLHGRTLTTPVSLLQCLKSIKEYAFVKSHYPLIITFEDHLTPDLQAKVAEMVTQIFGELLYYPEADSLMEFPTPESLKGRILISTKPPKEYLESKQCDDKDNEKELADKESSSPDLTDELETDDKCAPEYKRLITIRAGKPKGDVQDELKVVGQVRRLSLSEHALEKCSESYGDDIVRFTQTNILRVYPKGTRLDSSNYKPHIGWMYGAQMVAFNMQGYGKSLWFMQGMFRANGGCGYVKKPDFLIEKGPRNEVFDPERTLPVMKTLTVKVYMGSGWCSDFSQTHFDTYSPPDLYVKVCIIGVPADIAKKKTEEISNNWFPVWNEEFDFPLTVPELALLRIDVREHDSHGKDELGGQTCLPVSELKSGFRSVPLYDEKGDPFKSVKLLMRFRFT* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0404 561 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 325 411 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lja6g0404 561 Pfam C2 domain 433 535 IPR000008 -
Lja6g0404 561 ProSiteProfiles C2 domain profile. 414 543 IPR000008 -
Lja6g0404 561 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 6 5 560 - -
Lja6g0404 561 Gene3D - 24 101 - -
Lja6g0404 561 CDD C2_PLC_like 432 561 - -
Lja6g0404 561 Gene3D Phosphatidylinositol (PI) phosphodiesterase 105 426 IPR017946 GO:0006629|GO:0008081
Lja6g0404 561 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 429 560 IPR035892 -
Lja6g0404 561 CDD PI-PLCc_plant 108 400 - -
Lja6g0404 561 SUPERFAMILY EF-hand 7 111 IPR011992 -
Lja6g0404 561 SMART C2_3c 433 541 IPR000008 -
Lja6g0404 561 SUPERFAMILY PLC-like phosphodiesterases 109 414 IPR017946 GO:0006629|GO:0008081
Lja6g0404 561 SMART plcx_3 109 253 IPR000909 -
Lja6g0404 561 Pfam Phosphatidylinositol-specific phospholipase C, X domain 111 253 IPR000909 -
Lja6g0404 561 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 326 412 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lja6g0404 561 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 5 560 IPR001192 GO:0035556
Lja6g0404 561 PRINTS Phospholipase C signature 351 372 IPR001192 GO:0035556
Lja6g0404 561 PRINTS Phospholipase C signature 372 390 IPR001192 GO:0035556
Lja6g0404 561 PRINTS Phospholipase C signature 140 160 IPR001192 GO:0035556
Lja6g0404 561 PRINTS Phospholipase C signature 114 132 IPR001192 GO:0035556
Lja6g0404 561 PRINTS Phospholipase C signature 237 254 IPR001192 GO:0035556
Lja6g0404 561 PRINTS Phospholipase C signature 527 537 IPR001192 GO:0035556
Lja6g0404 561 SMART plcy_3 297 413 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lja6g0404 561 Gene3D C2 domain 429 561 IPR035892 -
Lja6g0404 561 MobiDBLite consensus disorder prediction 259 289 - -
Lja6g0404 561 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 109 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0404 Lja-Chr6 10017951 10023716 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0404 4 560 Acyl Lipid Metabolism Gene Families AT2G40116 61.167 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0404 K05857 - gmx:100799027 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0404 6 10017951 10023716 Lja6g0404 6 10017951 10023716 ECH
Lja6g0404 6 10017951 10023716 Lja6g0404 6 10017951 10023716 PCT