Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0402 ATGGAAACGAAGAAACCAATATCCAAACAGACTTACAAATTTTGCTTCTGCTGCCGGCGGCGGTTCAAGCTCACCGTATCGGAGGCGCCGCCGGAGATAAAAACCCTCTTCCAGAGCTACTCCGATGAGAACGAAATCATGACAGCTTCTCACCTCCGCAACTTCCTCGTTGAGGTGCAGAGGCTTGAGAAGGCCACCGAGGAGGAAGCTCAGGCCATCATCGATCGCCATAAGCATTTGAGTATCTTCCATCGAAGGGGACTCAATCTTGATGGTTTCTTCAAGTACCTCTTCAGTGATGATAATCCACCTCTGTTACCTTCTCTTGGGGTGTACCATGACATGTCTTTACCGTTGTCCCATTATTTCATATATACTGGTCATAATTCCTATCTAACTGGAAATCAGCTTAGCAGTGACTGCAGTGATGCCCCCATCATCAATGCGCTGGAGAGAGGTGTGAGGGTGATTGAACTAGATATATGGCCTAATGCATCAAAGGATGATGTGGATGTTCTTCATGGAGGGACATTGACTAGCCCTGTTGCGCTCATCAAATGTTTGAGGTCTATTAAGGATCATGCCTTTCTCGTGTCAGAATATCCCGTTGTAATAACCTTAGAAGACCACCTTACTCCGGATCTTCAGGCCAAAGTGGCTGAGATGGTCACTCAAACATTTGGGGACATTCTATTTGCTCCTACCTCAGAAAGCTTGAAGGAATTTCCTTCTCCTGAATCTCTTAAAAAGAGGATTATCATATCAACTAAACCACCTAAGGAGTACCTTGAGGCAAAAGAAGAGAAGGAAAAAGAGGAGGAATCACATAAGGGAAAGCCTCCAGGCGATGAAGAAGCATGGGGGAAGGAAGTCCCGAGTTTGAGAGGTGGTACTATAACTGATTACAAGCAGAATAGCGGGGATGACGATGTTGATGATGACGAGGAAGATGATGATGCAGAAAAGTCACGCCAAGACGTATCAGCTGAATATAGAAGTTTAATTGCCATTCATGCTGGCAAGCCTAAAGGCGGATTAGAGGAATGCCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGCTTCAGCTTGAAAATGCTGCTATAACTTATGGAAAAGAAATTGTCAGGTTTACTCAGCGGAATATACTGAGGGTGTATCCAAAAGGTACACGCATTACCTCGTCAAATTATAACCCATTGATTGGGTGGATGCATGGTGCTCAGATGGTTGCCTTTAACATGCAGGGGTATGGGAGATCTCTATGGTTGATGCAAGGAATGTTCAAAGCCAATGGTGGATGCGGTTATGTGAAAAAACCAGATTTTCTATTAAAAACTGGTCCCAATAATGAGGTCTTTGATCCTAAAGTTCAATTGCCTGTGAAGACTACTTTGAAGGTGACTGTATATATGGGGGAAGGATGGTATAATGATTTCAAGCATACTCACTTTGATCAATTCTCACCTCCAGACTTCTATGCAAGGGTGGGGATTGCTGGAGTCCCTGGTGATACTGTTATGAAGAAAACTAAGGCAGTAGAGGATAATTGGTTGCCTTCTTGGAATGAGGTATTCGAGTACCCACTCACTGTTCCGGAATTGGCTCTGCTTCGCATAGAAGTTCATGAGTATGACATGTCTGAGAAGGATGACTTTGGAGGGCAGTCATGCTTACCTGTGTGGGAACTAAGTAGCGGAATTCGAGCAGTTCCACTGCATTCCCGCAAAGGTGACAAGTACAACCATGTAAGGCTTCTCATGCGCTTTGAGTTCATCTAA 1791 0.4439 METKKPISKQTYKFCFCCRRRFKLTVSEAPPEIKTLFQSYSDENEIMTASHLRNFLVEVQRLEKATEEEAQAIIDRHKHLSIFHRRGLNLDGFFKYLFSDDNPPLLPSLGVYHDMSLPLSHYFIYTGHNSYLTGNQLSSDCSDAPIINALERGVRVIELDIWPNASKDDVDVLHGGTLTSPVALIKCLRSIKDHAFLVSEYPVVITLEDHLTPDLQAKVAEMVTQTFGDILFAPTSESLKEFPSPESLKKRIIISTKPPKEYLEAKEEKEKEEESHKGKPPGDEEAWGKEVPSLRGGTITDYKQNSGDDDVDDDEEDDDAEKSRQDVSAEYRSLIAIHAGKPKGGLEECLKVDPDKVRRLSLSELQLENAAITYGKEIVRFTQRNILRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGYVKKPDFLLKTGPNNEVFDPKVQLPVKTTLKVTVYMGEGWYNDFKHTHFDQFSPPDFYARVGIAGVPGDTVMKKTKAVEDNWLPSWNEVFEYPLTVPELALLRIEVHEYDMSEKDDFGGQSCLPVWELSSGIRAVPLHSRKGDKYNHVRLLMRFEFI* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0402 596 Gene3D C2 domain 461 596 IPR035892 -
Lja6g0402 596 SMART plcx_3 113 257 IPR000909 -
Lja6g0402 596 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 468 595 IPR035892 -
Lja6g0402 596 SUPERFAMILY EF-hand 30 107 IPR011992 -
Lja6g0402 596 Pfam Phosphatidylinositol-specific phospholipase C, X domain 115 257 IPR000909 -
Lja6g0402 596 Pfam Phosphoinositide-specific phospholipase C, efhand-like 32 101 IPR015359 -
Lja6g0402 596 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 113 257 - -
Lja6g0402 596 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 361 447 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lja6g0402 596 PRINTS Phospholipase C signature 241 258 IPR001192 GO:0035556
Lja6g0402 596 PRINTS Phospholipase C signature 407 425 IPR001192 GO:0035556
Lja6g0402 596 PRINTS Phospholipase C signature 386 407 IPR001192 GO:0035556
Lja6g0402 596 PRINTS Phospholipase C signature 144 164 IPR001192 GO:0035556
Lja6g0402 596 PRINTS Phospholipase C signature 562 572 IPR001192 GO:0035556
Lja6g0402 596 PRINTS Phospholipase C signature 118 136 IPR001192 GO:0035556
Lja6g0402 596 MobiDBLite consensus disorder prediction 261 290 - -
Lja6g0402 596 CDD C2_PLC_like 466 595 - -
Lja6g0402 596 Gene3D Phosphatidylinositol (PI) phosphodiesterase 109 460 IPR017946 GO:0006629|GO:0008081
Lja6g0402 596 Gene3D - 28 106 - -
Lja6g0402 596 MobiDBLite consensus disorder prediction 307 321 - -
Lja6g0402 596 SUPERFAMILY PLC-like phosphodiesterases 113 449 IPR017946 GO:0006629|GO:0008081
Lja6g0402 596 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 8 596 - -
Lja6g0402 596 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 360 446 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lja6g0402 596 CDD PI-PLCc_plant 112 435 - -
Lja6g0402 596 Pfam C2 domain 468 569 IPR000008 -
Lja6g0402 596 SMART plcy_3 331 448 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Lja6g0402 596 MobiDBLite consensus disorder prediction 261 327 - -
Lja6g0402 596 ProSiteProfiles C2 domain profile. 449 578 IPR000008 -
Lja6g0402 596 SMART C2_3c 468 576 IPR000008 -
Lja6g0402 596 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 8 596 IPR001192 GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0402 Lja-Chr6 9989818 9994751 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0402 7 596 Acyl Lipid Metabolism Gene Families AT3G55940 68.908 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0402 K05857 - gmx:100784534 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0402 6 9989818 9994751 Lja6g0402 6 9989818 9994751 ECH
Lja6g0402 6 9989818 9994751 Lja6g0402 6 9989818 9994751 PCT