LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g0371	ATGGAAAACTCTGAACAAGTTCCAGTCCCTCCAAACCCTAACAATGCCAATACCCACCTCACTGAAGAAGACGACGACGACGACGACACCGACATCATCGAAGAAGAAGAAGAAGACGAAGACGACGACGACGACGTCGTTTCGGGGGACCGGAATCAGCGAAACCCTCAATCCCCTTTATCACGGTTACGCGAGCAGCGTTTCAAGCTCGAAACCCTTTCCCGGCGACTGTCATCGGAGCTGGTCCCTATCCGAGTCCACGACGTGCTGATTCGCGGAAACACCAAGACCAAGGATTGGGTGATCGAGGCGGAGCTCAAGGTTCTCGAGGAGGCCACCACCATGCAGGAGCTCATTCGCGCCTCCGAAATCGCACTCGCCAGGCTCCAGAACCTCGGGATTTTCGATTCCAGCAAGCTCCGCCTTGAGCCCGGGCCGCCGGAGTTGCCTGACACCGCCAATGTCATCGTTGACATTGTCGAGGCCGCTAGCAGTGTCTCCGGTGAATGCGGCGTTTATACCAAACCCTCGACTAGTTCTTGGACAACTGAAGGTACTCTTAAGTACAAAAACTTTTTAGGTTATGGTGATCTATGGGATATGTCATTGGCCTATGGTGCCAACCAAGCAACAGAGGTGAGTTTGGGGGTGTATGCTCCTCGACTTAAAGGATTATTAACACCTTTGGTAGCACGGATATCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAGCAGCTGTTGGGCTTGTCTCTCGGATTAATCTCTACAAAGCACCATGACTTAGTATACACTCTTGGATGGCGTACATTAACAGATCCATCGCAAATGTCATCCTGGTCTATAAGGAGGCAGCTTGGGCATGGTTTACTGTCATCCCTGAAGTACACATTTAAAATTGACAAGAGAAACTCACCTATTAGGCCCACAAAAGGGTATGCTTTTCTTTCTACCACTCACTTTGGCGGCCTAACACCAGATCATCGGAGCTTGCGATTTATACGTCAGGAGTTTGATGTTCGCTACGCTGTCCCCTTTGGATTTTATAATACAGCACTGAACCTTGGGATTTCTGCTGGTGCTGTTTTTCCATGGGGGCATGGTTTCATGAACAAGCCATCTCCCCTTCCTGAAAGGTTTTATTTGGGTGGGGATTTCTCTCCAGTTTGCACCCTTGGAGGGCCAATAACATTGTGGGGGTTTAAAACTAGGGGATTGGGTCCTACTGAACCACGGAGACAAAGCAGAGATGCAGTGAATGATGACAATAATGATTCCTCCGGACGGGACTTTGTTGGAGGAGATCTTGCTGTTACTGCTTTTGCAGACCTCTCTTTTGATCTTCCAGTTAGGTGGCTAAGAGAACATGGAATCCACGGCCATGTTTTTGCTGGAGTTGGGAATACTGCTAAATTGACTCAGAATGAATATAAGAACTTCTCTCCTCGGAAGTTCTTAGAATCCTTTCGAACATCAGTAGGATGTGGATTTGTTGTTCCTACTAAACTTTTCCGCCTGGAGGGTAACTTCTACCACATACTCAGGCAGGATGAACATGATCGTGGGAAAACTGGATTTAGGTTCAGCTTCTCAGCTCCTTCTTAG	1614	0.4827	MENSEQVPVPPNPNNANTHLTEEDDDDDDTDIIEEEEEDEDDDDDVVSGDRNQRNPQSPLSRLREQRFKLETLSRRLSSELVPIRVHDVLIRGNTKTKDWVIEAELKVLEEATTMQELIRASEIALARLQNLGIFDSSKLRLEPGPPELPDTANVIVDIVEAASSVSGECGVYTKPSTSSWTTEGTLKYKNFLGYGDLWDMSLAYGANQATEVSLGVYAPRLKGLLTPLVARISMLSQDWQEFSSYKEQLLGLSLGLISTKHHDLVYTLGWRTLTDPSQMSSWSIRRQLGHGLLSSLKYTFKIDKRNSPIRPTKGYAFLSTTHFGGLTPDHRSLRFIRQEFDVRYAVPFGFYNTALNLGISAGAVFPWGHGFMNKPSPLPERFYLGGDFSPVCTLGGPITLWGFKTRGLGPTEPRRQSRDAVNDDNNDSSGRDFVGGDLAVTAFADLSFDLPVRWLREHGIHGHVFAGVGNTAKLTQNEYKNFSPRKFLESFRTSVGCGFVVPTKLFRLEGNFYHILRQDEHDRGKTGFRFSFSAPS*	538

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g0371	537	MobiDBLite	consensus disorder prediction	412	427	-	-
	Lja6g0371	537	Pfam	Surface antigen variable number repeat	84	161	IPR010827	GO:0019867
	Lja6g0371	537	Gene3D	membrane protein fhac: a member of the omp85/tpsb transporter family	171	535	-	-
	Lja6g0371	537	MobiDBLite	consensus disorder prediction	408	430	-	-
	Lja6g0371	537	MobiDBLite	consensus disorder prediction	1	63	-	-
	Lja6g0371	537	PANTHER	SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER	11	535	IPR039910	-
	Lja6g0371	537	MobiDBLite	consensus disorder prediction	21	46	-	-
	Lja6g0371	537	PANTHER	OUTER MEMBRANE OMP85 FAMILY PROTEIN	11	535	-	-
	Lja6g0371	537	MobiDBLite	consensus disorder prediction	1	18	-	-
	Lja6g0371	537	Pfam	Omp85 superfamily domain	191	534	IPR000184	GO:0019867
	Lja6g0371	537	Gene3D	membrane protein fhac	83	162	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g0371	K07277		-	gmx:100785408	875.544

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja6g0371	6	9436031	9441887	Lja6g0371	6	9436031	9441887	ECH
	Lja6g0371	6	9436031	9441887	Lja6g0371	6	9436031	9441887	PCT