Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0336 ATGAAGCCTCACACTCAGGCTTCATTCGCCACCGGCCCGCCGCACGTGACCTATTTTCGTCGCGCACGTGCCTCGCCATCCAAGACTCATCTTCCGCTGCCGCACCACGAAGTCCGGCGCGTTTGGACCGCCAAACGCCGCCGTGTCAGCTTATCCGTCCGCCACCCGAACCGCGTCGTCGCCGCATGGAAACCCGAACATTCCGACCGGAGCGAGAGGGAAGACTCCGTCGAGCCAACAACGGATAGTGCTCGAGCTCGAAGCAGCCGGCGAGGCGTCCTGGTCGCGCCGTTCCTGGCCGCCGGCGCGTCGTTTCTGCTCTCCGCAGCGAGAGCGGAAGAGAAATCGCCGCCACCATCTCCGTCGCCGACACCGTCGTCTCCGGCGGCGGCGGAATTGACGGCTGTGAAACCGGACGAGGAGAAGAAGAAAGAGGAACCGGCGGAAGTGGTGACGTCGAGGATTTACGACGCGACGGCGATAGGGGAACCGTTGGCGATAGGGAAGGAGAAAGGGAAAGTGTGGGAGAAGTTGATGAATTCTCGAGTGGTTTATTTGGGGGAAGCGGAGCAGGTTCCGGTTCGTGATGACAAGGAATTGGAGCTTGAGATTGTGAAGAATTTGCAGAGGCGTTGTGTTGAGAAAGAAAAGCGATTGTCTTTGGCTCTTGAAGCTTTTCCCTCTGATCTTCAGGAACCACTCAATCAGTACTTGGATAAGAAGATAGATGGAGAAACTTTGAAGACTTATACAGGGCATTGGCCACCTGAACGATGGCAGGAGTATGAACCTATTCTTAGTTACTGCCTTGAAAATGGAATTCGACTTGTAGCTTGCGGTACTCCACTGAAGATCTTAAGGACTGTCCAGGCAGAAGGAATTCGTGGTCTTACAAAGGCTGAACGTAAATTATATGCACCTCCAGCTGGTTCAGGCTTCATATCTGGCTTTACTTCTATCTCGCGTAGATCTTTACTCGATAGCACTCCAAATCTGTCTTTTCCTTTTGGTCCTAGCTCATACCTATCTGCACAGGCTAGAGTAGTTGATGAGTATACTATGTCCCAGATTATCTTACAAAATGTGCTTGATGGAGGAGCAAATGGTATGTTATTAGTTGTGACTGGTGCGAGCCATGTTACATATGGATCTAGAGGAACTGGAGTGCCAGCAAGAATTTCAAGAAAAATACAAAAGAAAAACCAAGTAGTCATATTACTTGATCCTGAGAGGCAATTCATTCGCAGAGAGGGAGAAGTTCCAGTTGCTGATTTTTTGTGGTATTCTGCTGCCAGACCCTGTAATAGAAATTGCTTTGACCGTGCTGAGATTGCTCGGGTTATGAATGCTGCTGGGCAGAGGCGAGATGCCCTCCCACAGGATCTTCAAAAGGGAATTGATCTTGGTTTAGTATCACCAGAGGTTTTGCAAAACTTCTTTGATCTTGAGAAGTATCCTCTGATTTCAGAACTCACACACCGTTTCCAGGGTTTCAGGGAAAGATTGTTGGCAGATCCCAAATTCTTGCATAGATTAGCCATAGAAGAAGCTATTTCAATAACAACTACATTAATAGCACAGTATGAAAAGCGGAAAGAAAACTTTTTCCAAGAGCTTGACTATGTTATTACGGATACTGTTCGAGGATCAGTTGTTGATTTCTTTACAGTGTGGCTCCCTGCACCAACGTTGTCATTCCTTTCATATGCTGATGAGACGAATGCACCTGATAACCTTAATTCTCTAATAGGTCTTCTTGGTTCTATCCCTGACAATGCATTTCAAAAGAATCCAGCAGGGACAAACTGGGATCTCAACCATCGAGTTGCATCAGTTGTATTTGGTGGTATAAAGCTAGCTAGTGTTGGATTTGTTTCAAGCATAGGAGCCGTGGCTTCATCAAATTCTCTGTATGCATTTCGTAAATTCCTTAATCCAGCCGCTTTCACGAATCAGCAGATTGTAAGGTCACCAATACTTAAAACAGCACTCGTTTATGCATGCTTTCTTGGACTATCTGCAAATCTCCGTTATCAGATAATTGCAGGGGTAGTCGAGCATCGCATTTCTGATCAGTTTGCTTCCCAAACATTTCTTGTGAATATGCTTTCTTTTGTATCACGGACAATCAATTCATATTGGGGCACCCAGCAATGGATTGACCTTGCACGCTATACGGGACTGCAAGTCAGAAAGACAGAGTCACTAGATTCACCAGGGTCACCTACATCAGATACTCCAAGTCAAGCTGCAGTTTTATGCAACGAAACAGAAGAAGCTAGCATTGATGAGCCTAAAAAGTAA 2304 0.4701 MKPHTQASFATGPPHVTYFRRARASPSKTHLPLPHHEVRRVWTAKRRRVSLSVRHPNRVVAAWKPEHSDRSEREDSVEPTTDSARARSSRRGVLVAPFLAAGASFLLSAARAEEKSPPPSPSPTPSSPAAAELTAVKPDEEKKKEEPAEVVTSRIYDATAIGEPLAIGKEKGKVWEKLMNSRVVYLGEAEQVPVRDDKELELEIVKNLQRRCVEKEKRLSLALEAFPSDLQEPLNQYLDKKIDGETLKTYTGHWPPERWQEYEPILSYCLENGIRLVACGTPLKILRTVQAEGIRGLTKAERKLYAPPAGSGFISGFTSISRRSLLDSTPNLSFPFGPSSYLSAQARVVDEYTMSQIILQNVLDGGANGMLLVVTGASHVTYGSRGTGVPARISRKIQKKNQVVILLDPERQFIRREGEVPVADFLWYSAARPCNRNCFDRAEIARVMNAAGQRRDALPQDLQKGIDLGLVSPEVLQNFFDLEKYPLISELTHRFQGFRERLLADPKFLHRLAIEEAISITTTLIAQYEKRKENFFQELDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADETNAPDNLNSLIGLLGSIPDNAFQKNPAGTNWDLNHRVASVVFGGIKLASVGFVSSIGAVASSNSLYAFRKFLNPAAFTNQQIVRSPILKTALVYACFLGLSANLRYQIIAGVVEHRISDQFASQTFLVNMLSFVSRTINSYWGTQQWIDLARYTGLQVRKTESLDSPGSPTSDTPSQAAVLCNETEEASIDEPKK* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0336 767 MobiDBLite consensus disorder prediction 733 767 - -
Lja6g0336 767 Gene3D - 154 432 - -
Lja6g0336 767 MobiDBLite consensus disorder prediction 62 85 - -
Lja6g0336 767 MobiDBLite consensus disorder prediction 733 755 - -
Lja6g0336 767 PANTHER PROTEIN RETICULATA-RELATED 5, CHLOROPLASTIC 54 766 - -
Lja6g0336 767 MobiDBLite consensus disorder prediction 135 149 - -
Lja6g0336 767 CDD ChanN-like 182 406 IPR007314 -
Lja6g0336 767 MobiDBLite consensus disorder prediction 62 90 - -
Lja6g0336 767 Pfam Haem-binding uptake, Tiki superfamily, ChaN 174 393 IPR007314 -
Lja6g0336 767 Coils Coil 205 225 - -
Lja6g0336 767 MobiDBLite consensus disorder prediction 110 149 - -
Lja6g0336 767 Pfam Protein RETICULATA-related 500 684 IPR021825 -
Lja6g0336 767 SUPERFAMILY EreA/ChaN-like 173 429 - -
Lja6g0336 767 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 54 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0336 Lja-Chr6 8621103 8626357 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0336 - - mtr:MTR_3g071970 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0336 6 8621103 8626357 Lja6g0336 6 8621103 8626357 ECH