Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0335 ATGTCAACCTCCTCCTCCTCCTCATCATCTTCATCACAATCTCTGAAAATTGGCATAGTTGGGTTTGGCACTTTTGGCCAATTTCTTGCAAAGACAATGATCAAACAAGGCCACACTTTAATGGCAACTTCTCGAACAGATTACTCTCAACTCTGTCACCAATTGGGCATCCATTTTTTCAGGGATGTCACTGCATTCCTCAATGCTGGCATGGATGTCATCTTGTTATGCACATCGATCTTGTCGCTGTCTGAGGTTGTCGGGTCAATGCCACTAGATCGTCTGAAGCGACCAACGCTGTTTGTTGATGTACTTTCAGTCAAAGAGCACCCAAAGGACGTTCTGCTTAAAGTGTTGCCAGAGGAGTCAGACATACTCTGCACCCACCCAATGTTTGGACCCGTGAGTGGCAAGAATGGGTGGACAGATCTCACTTTCATGTTTGATAAAGTTAGAATACGAGATGAAGCTACCTGCTTTAAATACCTTCAGATTTTTGCAACAGAGGGTTGCAAAATGGTAGAAATGACCTGTGAGGAACATGATAAAGCAGCTGCGAAGAGTCAATTTATCACACACACAATAGGCAGGGCATTAGGTGAAATGGATATTAAACCCACACCTGTTGACACCAAGGGCTTTCAGGCACTCATTCAAGTGAAGGATACTGTCATGGGAAGCAGTTATGATCTGTATAGTGGATTATTCGTGCATAACAGATTTGCCAGACAAGAGCTGGAAAACCTTGAACAAGCCTTATACAAAGTTAAAGAGAAGCTGATTCAAAGTATAGATGAGTAG 801 0.4307 MSTSSSSSSSSSQSLKIGIVGFGTFGQFLAKTMIKQGHTLMATSRTDYSQLCHQLGIHFFRDVTAFLNAGMDVILLCTSILSLSEVVGSMPLDRLKRPTLFVDVLSVKEHPKDVLLKVLPEESDILCTHPMFGPVSGKNGWTDLTFMFDKVRIRDEATCFKYLQIFATEGCKMVEMTCEEHDKAAAKSQFITHTIGRALGEMDIKPTPVDTKGFQALIQVKDTVMGSSYDLYSGLFVHNRFARQELENLEQALYKVKEKLIQSIDE* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0335 266 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 177 260 IPR008927 -
Lja6g0335 266 Coils Coil 239 266 - -
Lja6g0335 266 Gene3D - 2 182 - -
Lja6g0335 266 PANTHER AROGENATE DEHYDROGENASE 1, CHLOROPLASTIC-LIKE 5 265 - -
Lja6g0335 266 ProSiteProfiles Prephenate/arogenate dehydrogenase domain profile. 15 266 IPR003099 GO:0004665|GO:0006571|GO:0008977
Lja6g0335 266 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 176 IPR036291 -
Lja6g0335 266 Pfam Prephenate dehydrogenase, nucleotide-binding domain 36 138 IPR046826 -
Lja6g0335 266 PANTHER AROGENATE DEHYDROGENASE-RELATED 5 265 IPR045011 GO:0006571|GO:0033730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0335 Lja-Chr6 8618830 8621026 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0335 K15227 - gmx:100810896 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0335 6 8618830 8621026 Lja6g0335 6 8618830 8621026 ECH