Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0328 ATGGCCGATCAGTTATCGAAGGCGGAGGAATTCGAGAAGAAAGCTGAGAAGAAGCTCAATGGTTGGGGCTTGTTTGGTTCCAAATATGAAGACGCTTCTGATCTCTTCGATAAAGCTGCCAATTCCTTCAAGCTCGCCAAATCATGGGACAAAGCGGGATCGACATACCTAAGGCTGGCAAGTTGTCATTTGAAGTTGGAAAGTAAACATGAAGCTGCACAGGCTTATGTTGATGCTGCACATTGCTATAAAAAGACTAACATAAAAGAGGCTGTATCTTGCTTAGACCATGCTGTAAATATTTTCTGTGATATTGGTAGACTCTCTATGGCTGCTAGATATTTGAAGGAAATTGCTGAGTTACATGAGTCTGAACAAAACATTGAGCAGGCGGTTGTTTACTTTGAAAAAGCAGCTGATTTTTTTCAAAATGAAGAAGTGACAACTTCTGCGAATCAGTGCAAGCAAAAAGTTGCCCAATTTGCTGCTCAGCTAGAGCAATATCAGAAGTCTATTGAGATTTATGAAGAGATAGCTCGCCAATCTCTTAGCAATAATTTGCTGAAGTACGGAGTGAAAGGCCATCTCCTTAATGCTGGCATTTGCCAACTCTGTAAAGGCGATGTTGTTGCCATATCCAATGCATTAGAGAGATATCAGGAATTAGATCCGACATTTTCGGGAACACGTGAATATAGATTATTGGCGGATATTGCTGCTGCACTTGATGAAGAAGATGTTGTGAAGTTTACTGATGTTGTCAAGGATTTTGATAGCATGACCCCTCTGGATTCTTGGAAGACCACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAGCTTGAGGAGGATGATCTTACTTAA 870 0.4103 MADQLSKAEEFEKKAEKKLNGWGLFGSKYEDASDLFDKAANSFKLAKSWDKAGSTYLRLASCHLKLESKHEAAQAYVDAAHCYKKTNIKEAVSCLDHAVNIFCDIGRLSMAARYLKEIAELHESEQNIEQAVVYFEKAADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIARQSLSNNLLKYGVKGHLLNAGICQLCKGDVVAISNALERYQELDPTFSGTREYRLLADIAAALDEEDVVKFTDVVKDFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0328 289 Coils Coil 151 178 - -
Lja6g0328 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Lja6g0328 289 CDD SNAP 19 278 IPR000744 GO:0006886
Lja6g0328 289 Pfam Soluble NSF attachment protein, SNAP 6 278 - -
Lja6g0328 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Lja6g0328 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Lja6g0328 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Lja6g0328 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Lja6g0328 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Lja6g0328 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Lja6g0328 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Lja6g0328 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
Lja6g0328 289 SMART tpr_5 53 86 IPR019734 GO:0005515
Lja6g0328 289 SMART tpr_5 112 145 IPR019734 GO:0005515
Lja6g0328 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
Lja6g0328 289 Coils Coil 111 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0328 Lja-Chr6 8334069 8339008 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0328 K15296 - jre:109004758 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0328 6 8334069 8339008 Lja6g0328 6 8334069 8339008 ECH
Lja6g0328 6 8334069 8339008 Lja6g0328 6 8334069 8339008 PCT