Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0313 ATGCTGTGTGTCAACCCTTCCTTCACCTCTCTCTTACCTTCTCCACTGGGAAAACCGCGTCTCATCTTTCCCTCCAATTCAAGGAACCCAATTTCCTGCACACTCCCAGGAACAGTTGCTGAACCAAAATTAACAGCTGCTGCTGAACCACTATTGCTTAATGCAGTTCGTGGGCTAGATGTTGAAAGGCCCCCAGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGAGTTACCAAACCATCTGTGAGAAACATCCTTCATTCCGTGAAAGGTCTGAAAATGTCGATCTTGTGGTGGAAATTTCATTGCAACCATGGAAGGTTTTCAAGCCTGATGGGGTGATTTTATTCTCCGATATTCTTACCCCACTTTCTGGGATGAATATACCCTTTGATATTGTCAAGGGTAAGGGTCCGGTCATATTTGATCCCATTCACTCAGCTGCCCAGGTTGATCAAGTGACGGAGTTTATTCCTCAAGGTTCAGTTCCATACGTTGGTGAAGCACTTACTATCTTGAGGAAAGAGGTGGATAATAAAGCTGCAGTCCTTGGTTTTGTTGGTGCTCCGTTCACCCTGGCATCATATGTGGTTGAAGGTGGTTCATCAAAACACTTCTCAAAAATAAAGAGATTGGCTTTCTCTCAACCCAAGGTTCTGCATTCATTACTGCAGAAGTTTACAACGTCAATGGCGAGATACATTCAATACCAAGCTGATAATGGAGCTCAAGCTGTTCAGATCTTTGACTCATGGGCGACAGAGCTAAGTCCAGTGGATTTCGAAGAGTTCAGTTTGCCTTACTTGAAGCAGATCGTTGATACCGTGAAAAAAACCCACCCAGAACTCCCTCTGATCCTCTATGCAAGTGGCTCTGGAGGCTTGCTCGAGAGACTAGCTTTGACAGGTGTGGATGTTGTTAGCTTGGATTGGACGGTTGATATGGCTGATGGTAGGAGAAGACTAGGACCGAATATAACTGTCCAAGGTAACGTGGATCCTGGTGTTCTTTTCGGTTCAAAAGAGATCATCACTGATAGAATACATGATACTGTGAGAAAAGCAGGCAGAGGGAAACATATCTTGAATCTTGGTCATGGCATTGTAGTAGGTACACCTGAGGAGAATGTTGCACATTTTTTTGAGGTTGCTAAAGGAATCAGATACTAA 1173 0.4442 MLCVNPSFTSLLPSPLGKPRLIFPSNSRNPISCTLPGTVAEPKLTAAAEPLLLNAVRGLDVERPPVWLMRQAGRYMKSYQTICEKHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPIHSAAQVDQVTEFIPQGSVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSQPKVLHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKKTHPELPLILYASGSGGLLERLALTGVDVVSLDWTVDMADGRRRLGPNITVQGNVDPGVLFGSKEIITDRIHDTVRKAGRGKHILNLGHGIVVGTPEENVAHFFEVAKGIRY* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0313 390 TIGRFAM hemE: uroporphyrinogen decarboxylase 52 386 IPR006361 GO:0004853|GO:0006779
Lja6g0313 390 Pfam Uroporphyrinogen decarboxylase (URO-D) 51 386 IPR000257 GO:0004853|GO:0006779
Lja6g0313 390 CDD URO-D 53 386 IPR006361 GO:0004853|GO:0006779
Lja6g0313 390 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 185 201 IPR000257 GO:0004853|GO:0006779
Lja6g0313 390 Hamap Uroporphyrinogen decarboxylase [hemE]. 49 389 IPR006361 GO:0004853|GO:0006779
Lja6g0313 390 Gene3D - 38 390 IPR038071 -
Lja6g0313 390 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 22 390 - -
Lja6g0313 390 SUPERFAMILY UROD/MetE-like 51 389 IPR038071 -
Lja6g0313 390 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 65 74 IPR000257 GO:0004853|GO:0006779
Lja6g0313 390 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 22 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0313 Lja-Chr6 7920577 7924207 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0313 K01599 - gmx:100817154 701.049