Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0302 ATGGTAAACCGTAGCCATGACAGCGACGATGACCGGGAGCAGCCAAAACCAGTGGTTCTCATCACCGGGTGCTCGCAGGAAGGATTAGGCCACGCGCTCGCACGCGCCTTCGCGGCCAACGATTGCACGGTGGTGGCTACGAGCAGGTCGCTGTCGAGCATGGCGGACCTTGAACCCGACCCGAGATTCTTCTTGCAAGAGCTCGACGTTCAGTCCGATGAGAGCGTGCGCCGTGTGACGGAGGCTGTTGTTCGCAAGTACGGCAGGGTCGATGTTCTGGTTAACAATGCCGGAATACAGTGTGTGGGCCCACTCGCTGAGGTTCCTCTTTCCGCCATTGAAAATGCCTTTGGGACCAATGTGTTTGGTTCCTTGAGGATGGTTCAGGCTGTTGTTCCTCACATGGCAACTAGGAAACAAGGAAAGATTGTGAACGTTGGTAGTGTTTCTGCTCTTGCTTCTGGACCTTGGTCAGGCGCTTACTCTGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGATTGGAACTTGCACTCTTTGGAATTGATGTTGTCAATGTTGTCCCTGGTGCTATCAAGTCAAACATTGGAAATTCTGCCTTAGCCAGGTACGATCGCATGCCTGAGTTGGAGTTATTCAAGCCTTTTGAAGCGAGAATTAGAGAGCAAGCCAATTTTTCTCAGAGGAGCAGGACAACCCCTGCAGATGTGTTTGCTAAAAACACTGTAGCTGTCATCCTCAAGAAGAACCCACCTGCATGGTTCTCCTATGGGCCTTACTCAACCGCCATGGCTATCATGTACCATTTACCAATCTGTGTTAGAGACTTTATTTTGAAGAAAATAATGAAGTGTTGA 864 0.4977 MVNRSHDSDDDREQPKPVVLITGCSQEGLGHALARAFAANDCTVVATSRSLSSMADLEPDPRFFLQELDVQSDESVRRVTEAVVRKYGRVDVLVNNAGIQCVGPLAEVPLSAIENAFGTNVFGSLRMVQAVVPHMATRKQGKIVNVGSVSALASGPWSGAYSASKAALHALTDTLRLELALFGIDVVNVVPGAIKSNIGNSALARYDRMPELELFKPFEARIREQANFSQRSRTTPADVFAKNTVAVILKKNPPAWFSYGPYSTAMAIMYHLPICVRDFILKKIMKC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0302 287 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 17 190 - -
Lja6g0302 287 Pfam short chain dehydrogenase 18 201 IPR002347 -
Lja6g0302 287 Gene3D - 17 272 - -
Lja6g0302 287 PANTHER BNAC02G00550D PROTEIN 14 284 - -
Lja6g0302 287 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 148 176 IPR020904 GO:0016491
Lja6g0302 287 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 281 IPR036291 -
Lja6g0302 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 IPR002347 -
Lja6g0302 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Lja6g0302 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 IPR002347 -
Lja6g0302 287 PRINTS Glucose/ribitol dehydrogenase family signature 182 199 IPR002347 -
Lja6g0302 287 PRINTS Glucose/ribitol dehydrogenase family signature 161 180 IPR002347 -
Lja6g0302 287 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Lja6g0302 287 PRINTS Glucose/ribitol dehydrogenase family signature 135 151 IPR002347 -
Lja6g0302 287 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Lja6g0302 287 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 14 284 - -
Lja6g0302 287 CDD 17beta-HSD-like_SDR_c 18 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0302 Lja-Chr6 7490177 7492978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0302 13 198 Acyl Lipid Metabolism Gene Families AT1G62610 31.156 6.20e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0302 - - gmx:100775989 445.277