Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0300 ATGTTGACGTCAAGAGTTCTCGACAATCGGCCCATTCATCAGTGGAAGGTTACGGAGCTGAGAGAGGAGCTGAAGAGAAGGAGGTTAACTACCAAAGGTTTGAAGGATGATTTAATCAGGCGTTTGGATGAAGCCCTTCAGGCTGAGGCGGATGAGGCTGAGGCTGAGGCTGAAAATGCTCGTGCTGAGGATGCTGAGGCTTCTGAGAAGGACGATGCTGAAAGGAAGGGTGCTGATCCTCCTGATGCTGAAAGGGAGGGAGCTGTGGCATCTGAGAAGGACGAGGCCAATGGGGTTGACGGGGATGTAGCTGGTGTGAAAGATTCCCAGACAGTAACTGTTGATGCTGAAGCAGCGGATGTGAATGAAAAGGAAAGGGCTCAAACAATTGAAACTTCTGAAAAGGTGACTAGTGTTGAAGTTGAGACAATTGAAACAGAAAATGCAGAGAAGATTCCTCCTGAGGTTGTGGATTATGACAGCAATAAGAATGACAAGCAGGATGGTGTTACCATACCAATTGACATCAATAATAGTGTGTCAACAATGGATCAAGAAATTGAATACTCGCGGTTGCCAGCTGGTGCAGATTCTGCAAACGCGGGAGAGGATGTTATTGTCCATTCTTCTACCTTGGAGACCACTGTTACAATCACTGAGACTGTATTAACAGAAGTAGTAGTCAGTGGTCAGGATTCTGACAGGGTATACAAGAATAATGAGGATTCTGGAATCAAGCTGGATAATGAGCAGTCAAAGGTGCAGCTGGATAGTGAGGACTCAAAGCCCCAACTGCAGTGTGACACAAAGGCCCTTTGCGAGGATCTCATGCCCGACTCTTCTATTCCGGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTGCTGATAATGTCAAATTAGAACAAGATTTTGTTAGGCCGGAGATGGTGCAAGAACCATCATCCAGAAATGATGAACCTGTTTATGATGAATCAAATTCAATGGATGTTGGAGGGCTGCATGAGAAAAAGGCATCTGTTGAAGAAAATACCAATAATATTACAAGTCCAGACTTCAACAAGACCATTAACAGTGATGATGCGGGGTATCCCGAAAAGTTGAACTTGGATAGAAGTTCTGGTGATGATTCCATGGAAGAGGATGTGCCTGAGACTAAGCAATTTGATTCTAAGTTTAATGTTGATGAACTTAGTCTTAGAGACAAAGGGGAGAATATTGAAGTATCTATTGTGAAGGAGGAAAATAATACTGTAGTTGTGGGAGATGGTCTATCTGCAGGGAAAAGTGATACAAATCTTGACATTGACATGAGTCCTGTTGCCTTGGCTGATAAACGGAAATATGCTGAACAAGCATCTGTTGGGAACAATGAGCCTGCGAAAAGGCAACGCAGGTGGAGTACTGAAACACGTAAAGGAGCAGATCTGCAAAGCACTACTCCCAGACCTCCTACTACACCCAAGGATGAGCCAGTTGCGCCGAAACGCAACTTCCCCAGGTCTGATTCCTTTGCTGCTGCTGATGCTCCTAAAGAACGCATTGTTCCACCATCACAAAGGACCCCAACTAATTCCCTCAGGATTGATCGTTTCCTCCGACCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGCAAGACTGGGAAAGTTAGCAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCGTCCATTGAAGAAGCCACTGAAACACGGAATGCCGTGTATAATTTGCAATGGCCTCCAAATGGTGGACGCCTCTTAATTGCTGAGTATGTTGATCCTGAAGATGTGAAAATGAAGTTAGAAGCTCCTCCTCCTCCTCCTCCTCAGGCCGCCTCTGTCAGTGTTCCAACAGTTGCTCCTGCACCATCTTCCTCACAGCCAGAGCCTTCCCCTCGTCAGCAAAGGGAGCAGCATCCAATTCCAGTTGCTCTTCCACCTCCACCACCATTGTCAAGGGCCCCGCCAGTAGCAAGGGAACGGCTGCCATCCCCACCTCCCCTACCTGAGAAAGTGGACCCACCTATTGTCACTCTGGATGATCTCTTCCGCAAAACCACAGCAACTCCTCGGATCTACTATTTACCTTTGTCTGAAGAGCAAGTTGCCGCCAAACTTGCAGCACAGGGAAAAAGCACAAGGCAGTAG 2244 0.4568 MLTSRVLDNRPIHQWKVTELREELKRRRLTTKGLKDDLIRRLDEALQAEADEAEAEAENARAEDAEASEKDDAERKGADPPDAEREGAVASEKDEANGVDGDVAGVKDSQTVTVDAEAADVNEKERAQTIETSEKVTSVEVETIETENAEKIPPEVVDYDSNKNDKQDGVTIPIDINNSVSTMDQEIEYSRLPAGADSANAGEDVIVHSSTLETTVTITETVLTEVVVSGQDSDRVYKNNEDSGIKLDNEQSKVQLDSEDSKPQLQCDTKALCEDLMPDSSIPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTIIADNVKLEQDFVRPEMVQEPSSRNDEPVYDESNSMDVGGLHEKKASVEENTNNITSPDFNKTINSDDAGYPEKLNLDRSSGDDSMEEDVPETKQFDSKFNVDELSLRDKGENIEVSIVKEENNTVVVGDGLSAGKSDTNLDIDMSPVALADKRKYAEQASVGNNEPAKRQRRWSTETRKGADLQSTTPRPPTTPKDEPVAPKRNFPRSDSFAAADAPKERIVPPSQRTPTNSLRIDRFLRPFTLKAVQELLGKTGKVSSFWMDQIKTHCYVTYSSIEEATETRNAVYNLQWPPNGGRLLIAEYVDPEDVKMKLEAPPPPPPQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARERLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSTRQ* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0300 747 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 745 - -
Lja6g0300 747 MobiDBLite consensus disorder prediction 673 705 - -
Lja6g0300 747 Pfam RNSP1-SAP18 binding (RSB) motif 702 743 IPR032552 -
Lja6g0300 747 Pfam SAP domain 14 46 IPR003034 -
Lja6g0300 747 ProSiteProfiles SAP motif profile. 12 46 IPR003034 -
Lja6g0300 747 MobiDBLite consensus disorder prediction 281 301 - -
Lja6g0300 747 MobiDBLite consensus disorder prediction 60 101 - -
Lja6g0300 747 MobiDBLite consensus disorder prediction 475 549 - -
Lja6g0300 747 Gene3D SAP domain 12 59 IPR036361 -
Lja6g0300 747 MobiDBLite consensus disorder prediction 367 411 - -
Lja6g0300 747 SUPERFAMILY RNA-binding domain, RBD 544 631 IPR035979 GO:0003676
Lja6g0300 747 SUPERFAMILY SAP domain 12 49 IPR036361 -
Lja6g0300 747 MobiDBLite consensus disorder prediction 369 383 - -
Lja6g0300 747 SMART sap_9 12 46 IPR003034 -
Lja6g0300 747 MobiDBLite consensus disorder prediction 391 411 - -
Lja6g0300 747 Coils Coil 39 72 - -
Lja6g0300 747 MobiDBLite consensus disorder prediction 49 134 - -
Lja6g0300 747 CDD RRM_ACINU 550 634 IPR034257 -
Lja6g0300 747 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 745 - -
Lja6g0300 747 MobiDBLite consensus disorder prediction 631 709 - -
Lja6g0300 747 MobiDBLite consensus disorder prediction 280 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0300 Lja-Chr6 7478466 7483286 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0300 K12875 - gmx:100786288 932.939