Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0297 ATGTGGTTGTTGCTGCTCCTCCTGTGCTTGTTCTCGCCGCCGCTGGCTCACGCAATGCCGGTTCGAACCACCTTCTCCGCCAGGCTGGTTCACCGATTCTCCGAAGAATTGAAGCCGGTTCGTGCTCCCACCGGTTCCTGGCCGGACCGGAAGAGCTTCGGCTACTACAAGATGCTTCTCAGCAACGATTATCTCCGCCACAAGATCCGCCTCGGCGGCGCGCGCCACCAGCTCCTCTTCCCTTCTCACGGTAGCAAAACGATGTCGCTTGGTAACGACTTTGGCTGGTTATATTACACGTGGATTGATATAGGAACACCGAGCATTTCGTTTCTTGTAGCGTTGGATGCAGGGAGTGATCTCCTTTGGGTTCCGTGTGATTGCATACAGTGTGCTCCTTTGTCTTCAAGTTACTATTCCAATCTGGATAAAGATCTGAATGAGTTTAGTCCGTCTCGTTCGTTATCTAGCAAGCATCTAACTTGCAGCCATCGGTTATGTGATGTGGGTTCAAATTGTAAGAGTTCCAAGCAGCAGTGTCCCTACACGGTCAATTACTTATCAGAGGATACATCAAGTTCTGGATTGTTAGTTGAGGACATACTGCATCTTCAATCAGGGGATGACGGCGTATCAAACTCTTCTGTCCAGGCTTCAATTGTTATTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGTGTCATGGGTTTGGGACCTGGGGAAAGTTCAGTTCCAAGTTTTTTGGCCAAATCAGGATTAATCAAGGATTCTTTTTCCTTTTGCTTTAATGAAGATGATTCTGGTAGACTATTCTTTGGAGACAAGGGAACTAACACCCAACAGTCTACTTCATTCTTGCCATTGGATGGAACATTTTCAACCTACATCATTGGAGTGGAGGCATGTTGTATTGGGAATTCATGTCTTAAAATGACAAGTTTTAAGGCTCAGGTTGATAGTGGAACGTCATTTACATTTCTTCCCGGTCATGCATATGGAGCAATAACGGAGGAGTTCGATAAACAAGTAAATGCTTCGAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATCCATCCAGTTCGGAACAGTTGCCAAAGGTTCCCAGCTTAACACTCATGTTCCAACAGAATAACAGTTTTGTGGTCTATAATCCTGTGTTCACATTCTATGACAATCAGGGAGTTGTTGGATTTTGCTTAGCCATACAGCCAACCGAAGGGGATATGGGAACAATTGGACAGAACTTCATGACGGGATACCGATTGGTTTTTGATAGGGAAAACAAAAATCTAGCATGGTCACCCTCAAATTGTCAGGATCTCAGTCTAGGTAAGAGGATGCCCCTCTCTCCTCCAAACAAGACATCATCAGCCCCATTGCCAACAGATGAGCAGCAAAGAACCAATGGACATGCGGTTGCTCCAGCTATTGCTGGAAGAGCTTCTCCCAAACCCTCAGCTGCTCCATCTCGGATCATTTCATGCCAGCTACATTATTGGCACAGCTACTGGTTTCTTCTATTTCAACTTTTGTCAGCCTTCTACTGA 1575 0.4597 MWLLLLLLCLFSPPLAHAMPVRTTFSARLVHRFSEELKPVRAPTGSWPDRKSFGYYKMLLSNDYLRHKIRLGGARHQLLFPSHGSKTMSLGNDFGWLYYTWIDIGTPSISFLVALDAGSDLLWVPCDCIQCAPLSSSYYSNLDKDLNEFSPSRSLSSKHLTCSHRLCDVGSNCKSSKQQCPYTVNYLSEDTSSSGLLVEDILHLQSGDDGVSNSSVQASIVIGCGMKQSGGYLDGVAPDGVMGLGPGESSVPSFLAKSGLIKDSFSFCFNEDDSGRLFFGDKGTNTQQSTSFLPLDGTFSTYIIGVEACCIGNSCLKMTSFKAQVDSGTSFTFLPGHAYGAITEEFDKQVNASRSSFEGSPWEYCYPSSSEQLPKVPSLTLMFQQNNSFVVYNPVFTFYDNQGVVGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRENKNLAWSPSNCQDLSLGKRMPLSPPNKTSSAPLPTDEQQRTNGHAVAPAIAGRASPKPSAAPSRIISCQLHYWHSYWFLLFQLLSAFY* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0297 524 Gene3D Acid Proteases 81 281 IPR021109 -
Lja6g0297 524 PANTHER ASPARTIC PROTEINASE-LIKE PROTEIN 1 8 464 - -
Lja6g0297 524 Gene3D Acid Proteases 282 449 IPR021109 -
Lja6g0297 524 Pfam Xylanase inhibitor C-terminal 321 443 IPR032799 -
Lja6g0297 524 Pfam Xylanase inhibitor N-terminal 98 281 IPR032861 -
Lja6g0297 524 SUPERFAMILY Acid proteases 92 448 IPR021109 -
Lja6g0297 524 ProSiteProfiles Peptidase family A1 domain profile. 98 443 IPR033121 -
Lja6g0297 524 PANTHER ASPARTYL PROTEASES 8 464 IPR001461 GO:0004190|GO:0006508
Lja6g0297 524 MobiDBLite consensus disorder prediction 451 479 - -
Lja6g0297 524 PRINTS Pepsin (A1) aspartic protease family signature 323 334 IPR001461 GO:0004190|GO:0006508
Lja6g0297 524 PRINTS Pepsin (A1) aspartic protease family signature 419 434 IPR001461 GO:0004190|GO:0006508
Lja6g0297 524 PRINTS Pepsin (A1) aspartic protease family signature 104 124 IPR001461 GO:0004190|GO:0006508
Lja6g0297 524 MobiDBLite consensus disorder prediction 451 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0297 Lja-Chr6 7415475 7420178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0297 91 450 Miscellaneous Gene Families AT1G44130 26.440 4.66e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0297 - - gmx:100782209 880.552