Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0284 ATGGGAGAAAACAATTCAACACAAGAGAAGAAACCTGCAGGTTGTGGGTTGATAACAGCAGTGTTCGGACGAAATGGTTGGTCACGAAAACCATCCTCATCCTCCTCTGCAGGTTCTTCTCCTGTAACCAACCACAACAATACCAGCGATACAAAACGGCGTCGTAGTGGCTCAAACAACGACGCCGTTTTAGCTGGTGCTGCTGCAGCTGCTTCATCCAACGCCGCCACAAGCGCTTCATCTCGCTCTGTCTCCAATGCTCCTTCTCCTCCATCCAATTCCAATCCACAGAAGCCATTAACAACACACCAAAATCCCCAAAGGAAACAACAACAACACAGCGAAATGCCACGTGTTGCGGCTGCAAGGGTGTCACCAGCTCAAGGCTACGTTAGCCAGGGAAGAACAGTGCCCAGAGAAGCTATTGGAATTTTCGGGGAGCTCGAAAGCATGATCAATGATCACCAAAAGAACCGGGGAACCGGTAACCTTGTTCGAGCCTCTTCAAGCAACGTGATGTTGTTTGGTAATTTAGGTAACATTAGGCAGGGAACAAGCCAAGATAATAGCTACCAAAACACAATGGATTACAATGTTGCCAATGGATCAGGAGGATACAATAGGAACAATGAGACTAAACAACAACAACAACAGCAACAACAACAACAACAAAACCCGGGTTCATTTTGCAGGGCTTTGTCTACTAGAATGGATCCTGAGCAATTGAAGATAATGGGGAATGAGGATTATAAAAATGGAAGATTTGAAGAGGCTTTGGCTTTGTATGATGCTGCTATTGCCATGGATCCAAATAAAGCTTCCTATAGAAGCAATAGAAGTGCTGCATTAACTGCACTTGGTAGGATTCTTGAGGCTGTGTTTGAATGCAGAGAAGCTATTCAGATTGAGCCTCATTACCAAAGAGCGCATCACCGGTTGGGAAATTTGCACCTTAGATTAGGAGAAACAGATAAGGCCCTTTATCATTATAAACAAGCAGGATCGGAGGCCGATCCGGACGAGGTTGCGAAAGCGAAGGCTCTTCAGGTCCATCTAAACAAGTGCACTGAGGCTCGCCGGCAAGGAGATTGGAACAAATTGATTACCGAAACCAGCAATGCTATATCATCCGGGGCAGATTCTGCTCCACAGATTTTTGGTCTGCAAGCTGAAGCGCTGTTAAAGCTCCGTAGGCATCAAGATGCAGACAATGTAATGTCAAAGTGCCCCAATTTTGGTGTTGACGAGTGTACCAAGTTCTTTGGACCTATTGGTAATGCAAATTTGTTGGTGACTCGTGCACAAGTTTATATGGCTTCTGGCAGATTTGAAGATGCTATGGAAGCAGCACAGAAAGCAGCTAGGTTGGACTCCAATAACAGGGATGCAAACAAGGTGTTGAGAAAGGTTCGAGGTGTCACGGCTGCTAGAGCTAGGGGAAATGAACTTTTCAAGGCTTCAAAATTCTCAGAGGCTTGCATTGCCTATGGAGAAGGCCTTGAGCACGACTCGTATAACTCCCTTTTATTGTGCAACCGAGCTGCTTGTAGATCGAAACTAGGCCAATTTGAGAAAGCTGTTGAAGATTGCAATGCTGCCCTTAACTTACGCCCATCTTACAGCAAAGCCAGGTTGAGAAGAGCCGATTGTTATGCCAAGTTGGAAAGATGGCAAGCTTCAGTAGAAGACTACGAAATCTTGCTAAAAGAGACACCAGATGATGAGGAAGTTAACCGGGCATTGTTGGAAGCTAGAGCACAGCTCAAGAAACAGCAAGGTTAA 1782 0.4557 MGENNSTQEKKPAGCGLITAVFGRNGWSRKPSSSSSAGSSPVTNHNNTSDTKRRRSGSNNDAVLAGAAAAASSNAATSASSRSVSNAPSPPSNSNPQKPLTTHQNPQRKQQQHSEMPRVAAARVSPAQGYVSQGRTVPREAIGIFGELESMINDHQKNRGTGNLVRASSSNVMLFGNLGNIRQGTSQDNSYQNTMDYNVANGSGGYNRNNETKQQQQQQQQQQQNPGSFCRALSTRMDPEQLKIMGNEDYKNGRFEEALALYDAAIAMDPNKASYRSNRSAALTALGRILEAVFECREAIQIEPHYQRAHHRLGNLHLRLGETDKALYHYKQAGSEADPDEVAKAKALQVHLNKCTEARRQGDWNKLITETSNAISSGADSAPQIFGLQAEALLKLRRHQDADNVMSKCPNFGVDECTKFFGPIGNANLLVTRAQVYMASGRFEDAMEAAQKAARLDSNNRDANKVLRKVRGVTAARARGNELFKASKFSEACIAYGEGLEHDSYNSLLLCNRAACRSKLGQFEKAVEDCNAALNLRPSYSKARLRRADCYAKLERWQASVEDYEILLKETPDDEEVNRALLEARAQLKKQQG* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0284 593 SUPERFAMILY TPR-like 475 591 IPR011990 GO:0005515
Lja6g0284 593 Pfam Tetratricopeptide repeat 428 460 IPR013105 -
Lja6g0284 593 PANTHER OS01G0616333 PROTEIN 7 592 - -
Lja6g0284 593 MobiDBLite consensus disorder prediction 185 228 - -
Lja6g0284 593 ProSiteProfiles TPR repeat profile. 239 272 IPR019734 GO:0005515
Lja6g0284 593 SMART tpr_5 307 341 IPR019734 GO:0005515
Lja6g0284 593 SMART tpr_5 239 272 IPR019734 GO:0005515
Lja6g0284 593 SMART tpr_5 427 460 IPR019734 GO:0005515
Lja6g0284 593 SMART tpr_5 273 306 IPR019734 GO:0005515
Lja6g0284 593 SMART tpr_5 473 506 IPR019734 GO:0005515
Lja6g0284 593 SMART tpr_5 541 574 IPR019734 GO:0005515
Lja6g0284 593 SMART tpr_5 507 540 IPR019734 GO:0005515
Lja6g0284 593 Pfam Tetratricopeptide repeat 309 340 IPR019734 GO:0005515
Lja6g0284 593 SUPERFAMILY TPR-like 239 463 IPR011990 GO:0005515
Lja6g0284 593 MobiDBLite consensus disorder prediction 71 114 - -
Lja6g0284 593 Pfam Tetratricopeptide repeat 509 540 IPR001440 GO:0005515
Lja6g0284 593 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 7 592 IPR044534 -
Lja6g0284 593 MobiDBLite consensus disorder prediction 26 47 - -
Lja6g0284 593 ProSiteProfiles TPR repeat profile. 427 460 IPR019734 GO:0005515
Lja6g0284 593 Gene3D Tetratricopeptide repeat domain 237 593 IPR011990 GO:0005515
Lja6g0284 593 Pfam TPR repeat 246 287 - -
Lja6g0284 593 MobiDBLite consensus disorder prediction 22 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0284 Lja-Chr6 6930780 6933821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0284 222 336 Glycosyltransferase AT3G11540 29.688 8.26e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0284 - - lang:109326248 730.324