Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0274 ATGGCTTCCCTTCAGCTGTTGAAACTAACTCAGCATGGCCAGAGCTTTCTGGCTTCAAGGAGGAAAGCTTTACTACTTGCATCTGGTATCTTAGTTGCTGGTGGAACAGCTGCATATATGCAATCAAGGTTTAGAGCCAATAAACATGATTTATTTGGCCAATGCAATGGCCAACATAGTGATAAAGAAGTCACAGAGGACGAGGTTATGAAAGAAACTACTCCGCCAAAAAATAAACAAAAGAAAGGGGGAGCGAAGTCACTTCAAGTCCTTGCTGCAATTCTTCTTTCTGAGATGGGAAAATTAGGTGCAAGGGATCTTTTAGCTTTAATTGGCATAGTGGTGCTGCGAACTGCTTTGAGCAACCGGCTTGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACGTGTACCATTGTTTTTCCGGTTAATTTCAGAAAATATTCTTTTGTGCTTCCTCTTATCAACCATTCATTCTACATCAAAGTTCATAACAGGAACTTTGAGTCTGCATTTCAGAAAAATATTGACAAAGCTTATCCATTCCCACTATTTTGAGAACATGGTATACTACAAAATATCACATGTGGATGGTCGTATTACTAACCCAGAGCAAAGACTTGCCAGTGATGTGCCGAAGTTCTGTTCGGAATTAAGTGAAATTGTACAGGATGATCTAACAGCAGTGACTGATGGAATTCTATATACATGGCGGCTGTGTTCTTATGCTAGCCCAAAATATGTCTTCTGGATATTGGCCTATGTACTCGGAGCTGGGACTGCGATCAGAAACTTCTCTCCTTCGTTTGGCAAACTTATGTCCAGAGAGCAGCAACTGGAAGGAGAGTATCGACAGCTTCAGTCACGATTAAGGACTCACTCAGAAAGTATAGCATTTTATGGTGGAGAGAGGAGAGAAGAATCTCATATTCAAGAGAAATTTAAGGCATTGGTTAGGCACATGAATAGAGTGCAACATGACCATTGGTGGTTTGGCATGATTCAGGACTTTTTATTGAAGTACCTTGGTGCAACTGTTGCTGTTATTTTGATCATTGAACCGTTCTTTTCTGGACATTTAAGGCCCGACAGTTCAACTTTAGGGCGTGCAGAGATGTTAAGCAATCTAAGATATCATACCAGTGTTATAATTTCCTTATTTCAGTCTCTGGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGTCTCAGTGGGTATGCTGATCGTATTTATGAGTTAATGTCTGTATCAAGGGAGCTACACTTGGTGGATGAGAAATCTTCACTGCAAAGACAAGGGAGTAGAAATTGCATAAGTGAAGCTAACTACATTGAATTTTCTGGTGTCAAGGTTGTGACCCCCACTGGTAACGTCTTGGTGGATGATCTGACCCTCAGGGTTGAGCCAGGATCCAATCTTTTGATTACAGGTCCAAATGGCAGTGGAAAGAGCTCTCTTTTCAGGGTTTTAGGCGGTCTTTGGCCAATGATATCTGGACATATCGTGAAACCTGGCATTGGTTCTGATCTTAATAAGGAAATTTTCTATGTGCCACAACGACCATACACAGCTGTAGGAACACTTCGTGATCAGCTAATTTATCCTCTTACTGCAGATCAAGAGGTTGAACCACTCTCAGATTGGGGGATGGTGGAGCTATTGAAAAATGTTGACCTTGAATACTTGTTGGATCGTTACCCGGCTGAAAAAGAGGTAAACTGGGGTGATGAACTTTCATTGGGCGAGCAACAGAGACTGGGCATGGCTAGACTTTTCTACCATAAGCCTAAATTTGCAATTCTTGATGAGTGCACAAGTGCTGTCACTACGGATATGGAAGAACGATTTTGTGCTAAAGTTCGAGCTATGGGAACATCATGCATTACCATATCACATCGTCCAGCGTTGGTTGCCTTCCATGATGTGGTTTTGTCCTTGGATGGTGAAGGTGGATGGAGTGTACATTATAGAAGGGAGGACTCTTCTACTGAAATGGGGATTGATACAATGAAGGAAACAGAAACCAAACGACAGAGTGATGCAAAAACTGTTCAACGAGCATTTGCCATGATCAATAAGGATTCTGCATTCTCAAGTTCAAAGGCACCGTCGTATATTGCAGAGGTGATATCTTCATCTCCATCTATGAGTCATACAATATCACCATCTGCTGTTCCCCAACTCCGTGGTAATACTAGGGCATTACCGCTGAGAGTAGCTGCCATGTGTAAAGTATTGGTACCCACTGTACTTGATAAACAAGGTGCACGACTATTTGCTGTTGCTATTCTTGTTGTTTCTAGAACATGGGTCTCAGATCGTATTGCATCGCTGAATGGTACTACTGTGAAGTTTGTTTTAGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTATTCTTCAAAGTGGTGCATCTTCTTTCATTGCACCTTCTATAAGACACTTGACAGCCAAGCTGGCCCTAGGGTGGCGGATTCGTTTGACACAACATCTACTCAATAACTACTTGAGACACAATGCATTCTACAAGGTCTTCCACATGGCAAGCAAAAATATTGATGCAGATCAGAGGATAACTCAAGATTTGGAGAAGTTAACAGCAGACTTGTCTGGATTGGTTACTGGATTAGTAAAGCCATCTGTGGATATTTTATGGTTCACATGGAGAATGAAGCTTTTAACTGGTCAGAGAGGAGTTGCTATACTCTATGCTTACATGTTACTTGGCCTGGGATTTTTAAGAACTGTTACGCCGAATTTTGGTGATTTGATTAGCCAAGAACAACAGCTTGAAGGAACCTTTAGGTTTATGCATGAAAGACTTTGTGCTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGTGCTCGAGAAAAAGCTATGGTTGAATCAAGGTTCAGAGAGCTTCTGACCCATTCCAAGTACCTTCTAAAAAAGAAGTGGTTGTTTGGTATACTCGACGATTTTATCACTAAGCAACTCCCTCATAATGTGACTTGGTTGCTTAGCTTGTTGTATGCTATGGAACATAAGGGAGACCGTGCCTCAATAAGTACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGTGACATTCTTGAGTTGAATAGGAAGCTTGTAGAGCTTTCGGGTGGCATTAATCGTATTTTTGAACTTGAAGAGTTCCTGGATGCAGCACAATCTGAGAACTTAATCAACGGTGGTGCTGTACATCCAGTGAGGGACAATCATTCTAAAGATGTTATTTCATTTTCTAAGGTTGATATTGTAACTCCTACCCAGAAGATGTTGGCCAGAGAGTTGACTTGTGATGTTGAGCTTGGGGGAAGCCTGCTTGTTACTGGTCCAAATGGAAGTGGAAAAAGTTCAATTTTCAGGGTTCTTAGAGGACTCTGGCCCATTGCTTCTGGAAGACTCTACCGACCATCTGAAGATATGGATCAAGAGGCTGGATCAGGTTGTGGCATCTTCTATGTTCCTCAGCGGCCATATACATGCTTGGGAACCCTGCGGGATCAAATTATATATCCCCTGTCCCGTGAGGAAGCAGAGTTTAAAGCATTGAAGTTGTACGGAAAAGGTGAAAAACATCCTGTTACTGGAAATTTGTTGGACATGCATTTGGAAGTTATCCTAGCGAATGTTCGGTTGAATTATCTTCTAGAAAGAGACGCAAGTGGCTGGGATGCAAAGCTAAATTGGGAAGACATTCTATCACTTGGAGAACAACAGAGGCTAGGCATGGCGCGCTTGTTCTTCCATAAGCCTAAAGTTGGTATCCTCGACGAGTGTACCAATGCAACTAGTGTGGATGTTGAAGAGCACCTATATGGACTTGCGAAGCAAATGGGAATCACATTTGTTACTTCGTCACAACGTCCTGCACTAATACCATTCCATTCCACGGAGTTACGGCTGATCGATGGCGAGGGTAATTGGGAACTTCGTCAGATCAAGCAATGA 4014 0.4218 MASLQLLKLTQHGQSFLASRRKALLLASGILVAGGTAAYMQSRFRANKHDLFGQCNGQHSDKEVTEDEVMKETTPPKNKQKKGGAKSLQVLAAILLSEMGKLGARDLLALIGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFRLISENILLCFLLSTIHSTSKFITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRITNPEQRLASDVPKFCSELSEIVQDDLTAVTDGILYTWRLCSYASPKYVFWILAYVLGAGTAIRNFSPSFGKLMSREQQLEGEYRQLQSRLRTHSESIAFYGGERREESHIQEKFKALVRHMNRVQHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMSVSRELHLVDEKSSLQRQGSRNCISEANYIEFSGVKVVTPTGNVLVDDLTLRVEPGSNLLITGPNGSGKSSLFRVLGGLWPMISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEVEPLSDWGMVELLKNVDLEYLLDRYPAEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYRREDSSTEMGIDTMKETETKRQSDAKTVQRAFAMINKDSAFSSSKAPSYIAEVISSSPSMSHTISPSAVPQLRGNTRALPLRVAAMCKVLVPTVLDKQGARLFAVAILVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLIGLSILQSGASSFIAPSIRHLTAKLALGWRIRLTQHLLNNYLRHNAFYKVFHMASKNIDADQRITQDLEKLTADLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPNFGDLISQEQQLEGTFRFMHERLCAHAESVAFFGGGAREKAMVESRFRELLTHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELNRKLVELSGGINRIFELEEFLDAAQSENLINGGAVHPVRDNHSKDVISFSKVDIVTPTQKMLARELTCDVELGGSLLVTGPNGSGKSSIFRVLRGLWPIASGRLYRPSEDMDQEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEFKALKLYGKGEKHPVTGNLLDMHLEVILANVRLNYLLERDASGWDAKLNWEDILSLGEQQRLGMARLFFHKPKVGILDECTNATSVDVEEHLYGLAKQMGITFVTSSQRPALIPFHSTELRLIDGEGNWELRQIKQ* 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0274 1337 SMART AAA_5 1124 1327 IPR003593 -
Lja6g0274 1337 SMART AAA_5 472 651 IPR003593 -
Lja6g0274 1337 MobiDBLite consensus disorder prediction 56 82 - -
Lja6g0274 1337 CDD ABCD_peroxisomal_ALDP 1099 1330 - -
Lja6g0274 1337 Coils Coil 279 299 - -
Lja6g0274 1337 Gene3D - 433 706 IPR027417 -
Lja6g0274 1337 Pfam ABC transporter transmembrane region 2 746 1011 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g0274 1337 Pfam ABC transporter transmembrane region 2 91 359 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g0274 1337 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1099 1336 IPR003439 GO:0005524
Lja6g0274 1337 SUPERFAMILY ABC transporter transmembrane region 142 417 IPR036640 GO:0005524|GO:0016021
Lja6g0274 1337 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 78 597 - -
Lja6g0274 1337 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 592 1337 - -
Lja6g0274 1337 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 592 1337 - -
Lja6g0274 1337 Pfam ABC transporter 464 609 IPR003439 GO:0005524
Lja6g0274 1337 MobiDBLite consensus disorder prediction 60 79 - -
Lja6g0274 1337 Gene3D - 1087 1329 IPR027417 -
Lja6g0274 1337 Gene3D ABC transporter type 1, transmembrane domain 101 424 IPR036640 GO:0005524|GO:0016021
Lja6g0274 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1094 1325 IPR027417 -
Lja6g0274 1337 ProSitePatterns ABC transporters family signature. 1255 1269 IPR017871 GO:0005524
Lja6g0274 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 651 IPR027417 -
Lja6g0274 1337 Pfam ABC transporter 1117 1283 IPR003439 GO:0005524
Lja6g0274 1337 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 78 597 - -
Lja6g0274 1337 CDD ABCD_peroxisomal_ALDP 447 655 - -
Lja6g0274 1337 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524
Lja6g0274 1337 SUPERFAMILY ABC transporter transmembrane region 760 1069 IPR036640 GO:0005524|GO:0016021
Lja6g0274 1337 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 447 676 IPR003439 GO:0005524
Lja6g0274 1337 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 151 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0274 Lja-Chr6 6661376 6679130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0274 1 1337 Acyl Lipid Metabolism Gene Families AT4G39850 76.746 0.0 2116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0274 K25819 - gmx:100813765 2364.73