Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0243 ATGATATCTTCAGTAGTCGAGGGTGGATTGGACGAGGGCAGACACGAGTCTTCGTCTCTGCTAGACCTAGACTCATCTCTGTCCTCGTCCGATTTGATCATGAATTTGAACCTTTCACTACCCAGTGAAACGTTCTTGAAGGCTGCAATTTCACTCAAGGACAAGGTGGTGGAGATGAGTTGGAACCGGAGAGAAGTTGTTGATCCGACGGTGTATACGGGTTTGCTGGGGACGGCTTTCACTTGCTTGAGGTCGTACCAGGTCACCGGTTGCCGGAAGGATTTACTCTTGTGCTCTGAGATCATTGACACGTGTGCCGCTGCTGCACGTGCCTCCTTGAGGCACGTGACTTTCTTGTGCGGTAGAGGTGGCGTATATGCACTTGGTGCCGTGGTTGCTAATTACATGGGGGATCTTCGAAAGCGTGACCAGTTTTTGGGTCTGTTCGTTGAGGTAGCGAAGGAGGGAGCCCTCCCCGTCGGACCGGAAGAAGGCGGTTTTGGAATGTCATACGATCTTCTATACGGGCGAGCCGGGTTCTTATGGGCCGCATTATTCTTAAACAACAACCTTGGAGAACATGTCGTACCCGAAGACATTCTAACACCAATCATTGACGCGGTGTTGGCAGGAGGCAGAGCTGGAACATCTGACATCAAAGACTGTCCATTGATGTATAGGTGGCACGGAACAAGGTACTTAGGTGCTGCGAACGGCGTTGTTGGTATCCTGCACGTGCTGCTTCATTTTCAGCTTCATGGTGAGGATGCGGAAGATGTTAAAGGAACTTTGAGGTACCTGATGAGTAAACGCTTCCCTCACAGTGGGAACTACCCTTCAAGTGAAGGGAATCCGAGGGATAAGTTGGTGCAGTGGAGTCATGGCGCAACTGGCATGGCCATCACATTGTGCAAAGCAGCACAGGTTTTTCCAAGTGACAGAGAACTACGAGATGCAGCAATAGAAGCAGGGGAAGTTGTGTGGAAGAGTGGATTAGTGAAGAAGGTGGGACTTGCAGATGGTGTCTCTGGAAATGCCTACGCCTTCCTTTCTCTTTACAGACTAACTAAAGAGAGTATATATGAAGAGAGAGCAAGATCATTCTCCAGCTTCTTGTATGATAATGTGACAGCTCTGCAGGGAGCTGCTGATGAGGGGCAAGAACCTGGTGGTGGCAATGGCTACTCTCTCTTCCATGGACTTGCTGGGACAGCATGTCTCTGGTTTGATCTGCTTGAACCCAACAACTCTAGGTTTCCAGGCTATGAATTATAG 1275 0.4965 MISSVVEGGLDEGRHESSSLLDLDSSLSSSDLIMNLNLSLPSETFLKAAISLKDKVVEMSWNRREVVDPTVYTGLLGTAFTCLRSYQVTGCRKDLLLCSEIIDTCAAAARASLRHVTFLCGRGGVYALGAVVANYMGDLRKRDQFLGLFVEVAKEGALPVGPEEGGFGMSYDLLYGRAGFLWAALFLNNNLGEHVVPEDILTPIIDAVLAGGRAGTSDIKDCPLMYRWHGTRYLGAANGVVGILHVLLHFQLHGEDAEDVKGTLRYLMSKRFPHSGNYPSSEGNPRDKLVQWSHGATGMAITLCKAAQVFPSDRELRDAAIEAGEVVWKSGLVKKVGLADGVSGNAYAFLSLYRLTKESIYEERARSFSSFLYDNVTALQGAADEGQEPGGGNGYSLFHGLAGTACLWFDLLEPNNSRFPGYEL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0243 424 PRINTS Eukaryotic LanC-like protein family signature 410 424 IPR020464 -
Lja6g0243 424 PRINTS Eukaryotic LanC-like protein family signature 201 216 IPR020464 -
Lja6g0243 424 PRINTS Eukaryotic LanC-like protein family signature 269 284 IPR020464 -
Lja6g0243 424 PRINTS Eukaryotic LanC-like protein family signature 307 328 IPR020464 -
Lja6g0243 424 PANTHER LANC-LIKE PROTEIN 22 424 - -
Lja6g0243 424 CDD euk_LANCL 71 420 - -
Lja6g0243 424 SMART LANC_like_2 65 424 IPR007822 -
Lja6g0243 424 Gene3D - 9 424 IPR012341 GO:0005975
Lja6g0243 424 PRINTS LanC-like protein superfamily signature 289 309 IPR007822 -
Lja6g0243 424 PRINTS LanC-like protein superfamily signature 336 349 IPR007822 -
Lja6g0243 424 PRINTS LanC-like protein superfamily signature 68 86 IPR007822 -
Lja6g0243 424 PRINTS LanC-like protein superfamily signature 394 411 IPR007822 -
Lja6g0243 424 PRINTS LanC-like protein superfamily signature 233 249 IPR007822 -
Lja6g0243 424 PRINTS LanC-like protein superfamily signature 171 186 IPR007822 -
Lja6g0243 424 PANTHER LANC-LIKE PROTEIN GCL1 22 424 - -
Lja6g0243 424 Pfam Lanthionine synthetase C-like protein 66 424 IPR007822 -
Lja6g0243 424 SUPERFAMILY LanC-like 49 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0243 Lja-Chr6 5212647 5217657 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0243 - - gmx:100785406 673.315