Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0228 ATGGGAATTGCTTTTACCAAATGGACATGCACATTCTTATTTTGTTGTTGTCTCATCATTTCTGTAGTATATTCAGTGGAGGGGTTACATGGGGGTTCTAAAGTGAGAGGAGTGAACTTAGGAGGCTGGCTTGTTATTGAAGGTTGGATTAAGCCTTCACTGTTTGATGGCATTGCCAATGGAGACATGCTTGATGGGACGGAGGTGCAGTTGAAGTCGGTGACGTTGGAGAGGTATGTATCTGCAGAGAATGGTGGAGGAATGAATGTGACAGTTGACAGGGATGCCCCATCTTCATGGGAAACCTTCAGGTTATGGAGAGTATCTGAATCAGAATTTCAATTCCGTACCTCTGGTGGCCAATTTCTTACATGTGATGGTGGAGGGTGCACTGTCGCTGCGACAGCAAAATCAGCTTCAACATCAGAGACATATGAAATTGAGCGCAATGAGAAAAGCAGGATTCACATCAAGACAAAAAACGGGGCGTATCTGCAGGCTACCACAGGTGGTCAGCTAACAGCAGACTATCCAGACACACCAGGATGGGATAACAATGCTGCCACCTTTGAAATGATAATTGTAGCAAATTACTTACGTGGAGATTACCAGCTAGCAAATGGATATGGGCATGATCCCGCAAAAGATGTTCTTAAGAGACATAGAAATAGCTTTATCACTATAGAGGATTTCAAATTTCTAAATAAACATGGAATAAATACTGTGAGGATACCAGTTGGTTGGTGGATTGCTTTTGACCCTGATCCTCCAGATCCATTTATTGGAGGAAGTCTTGAAGCTCTAGATAATGCATTTTCATGGGCACAAGAATATGATACAAAATGCATAATTGACCTTCATGCTGCTCCTGGTTCCCAAAATGGAATGGAACATAGTGCCAGCAGAGATGGATTTACGGGCTGGCCGACTTCTCCGGATTTCATTTCAGAGTCATTACATGTTATTGAATTTTTGGTTTCTAGATATGCAAGACATCCTGCGTTGCTGGGAATCGAGCTTTTGAATGAATCATCTGCTCCCGCAGTTCCATTAGATACTTTAATTTCATACTATAAACAGGGCTACCAAATTGTTCGGAAACACTCGTCATCAGCTTATGTGATAATCTGCCAGAGAATTGGCAATGCAGATCCTATGGAACTTTATCAAGCCAACATAGGATCTCACAACTTAGTTTTGGATTTACATTTCTACAATCTCTTTGACACATTTTTTGTTAATAAGAGCGCTGAGGATAACATACAGTACATATACAAAAGCAGGGAAGGTCAATTGCAGGCCTTGAACAATTCAAATGGTCCACTCGTTTACATTGGAGAGTGGGTGAATGAGTGGAGTGTGACAAGCGGATCACAAAAAGATTATCAGGACTTTGGAAGGGCGCAGTTAGATGTCTACAATGAAGCTTCCTTTGGATGGTGTTATTGGACTATAAAAAATGACAGGGTGCATTGGGATTTTGAATGGAACATTAGGAACAACTATCTTCAATTAGGCAACTCACCCAGCAAACAGAACTTTATCACTTTAGGATTGTTAGGAATAGCATTCACCTGGTTTTCTCTTCTTCCCTTTTTATGA 1602 0.412 MGIAFTKWTCTFLFCCCLIISVVYSVEGLHGGSKVRGVNLGGWLVIEGWIKPSLFDGIANGDMLDGTEVQLKSVTLERYVSAENGGGMNVTVDRDAPSSWETFRLWRVSESEFQFRTSGGQFLTCDGGGCTVAATAKSASTSETYEIERNEKSRIHIKTKNGAYLQATTGGQLTADYPDTPGWDNNAATFEMIIVANYLRGDYQLANGYGHDPAKDVLKRHRNSFITIEDFKFLNKHGINTVRIPVGWWIAFDPDPPDPFIGGSLEALDNAFSWAQEYDTKCIIDLHAAPGSQNGMEHSASRDGFTGWPTSPDFISESLHVIEFLVSRYARHPALLGIELLNESSAPAVPLDTLISYYKQGYQIVRKHSSSAYVIICQRIGNADPMELYQANIGSHNLVLDLHFYNLFDTFFVNKSAEDNIQYIYKSREGQLQALNNSNGPLVYIGEWVNEWSVTSGSQKDYQDFGRAQLDVYNEASFGWCYWTIKNDRVHWDFEWNIRNNYLQLGNSPSKQNFITLGLLGIAFTWFSLLPFL* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0228 533 Gene3D - 47 187 - -
Lja6g0228 533 Pfam Cellulase (glycosyl hydrolase family 5) 226 488 IPR001547 GO:0004553|GO:0071704
Lja6g0228 533 Pfam Fascin domain 87 176 IPR022768 GO:0030674|GO:0051015
Lja6g0228 533 SUPERFAMILY Actin-crosslinking proteins 69 185 IPR008999 -
Lja6g0228 533 PANTHER FASCIN 11 511 IPR010431 GO:0007015|GO:0051015
Lja6g0228 533 Gene3D Glycosidases 188 514 - -
Lja6g0228 533 SUPERFAMILY (Trans)glycosidases 34 504 IPR017853 -
Lja6g0228 533 PANTHER - 11 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0228 Lja-Chr6 4679318 4683890 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0228 - - gmx:100809472 947.577