Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3363 ATGGGGTCTGCGACAAACCCAAACCCAAACCCAAACCCTAACCCTAAAAATGTGTACCATATCGGAGGTCTGCAAGTGGAATTTCCCTACCAACCATACGGGACTCAGTTTGCGTTCATGGGCAGAGTAATCTCCACCCTTAACCGAGCTCAGAAAGAAGGCCATTGTCACGCGTTGCTCGAGTCTCCAACTGGTACTGGCAAGTCCCTTTCGCTTCTTTGTTCCACTCTCGCTTGGCAGCAACACTATAAATCTAACCCCAAACCCGCTCCGGAGCCGGAGGATCCTCTAACCCACGGCGGCGGATTTGTTCCTGACACTGCATCAGATCCACAATCAGAGGCCAACAACAAAAAGCAGAAGAAAAAGCCAGCTCCAACTATTTACTATGCGTCGAGAACACACTCACAAATTTCTCAAGTGGTTCGTGAATTGCGGAAAACTGCATACAGGGTGCCCATGGCTGTGCTGGCAGCACGGAAACATTACTGCACCAACAAAAATATACTTGGCAAAGAGAACCTTGATGAAGAATGTAAACTACTATTGAAAGATCAGGCAATGGGGTGTCCAGAATTCAAAAATGCTCATAAAGTCAAAGGTCATCCATCCCTTCAGAAGGGAGGAAGCAATGAGGTGCATGACATAGAAGATCTTGTAAAAGTTGGACAAGTGGTCAAAGGTTGCTCTTATTATGCTGCGCGTTCTATGTCTGATGATGCACAGTTGGTATTTTGTCCATATAGTTATATAATTAATCCAATCATTAGGGGAGCTATGGATGTGGATATTAGAGGAGCTATCGTGATTCTTGATGAAGCTCACAATATAGAGGACATCACTCGTGATGCTGGCAGTGTGGATATTGAAGAGGATGTCTTGGATAAATTACAAGTGGAGCTCCAACAACTTTGTTCTTCAAACACTGCAATTTACCAACCGTTATATGAAATGACACAGGGCCTTACTAGTTGGATTGAACAAAAGAAAAATAAACTAGAAAAACGCGATTTTCAGCACTACGTGTCGTGTTGGACTGGTGATAAGGCTTTACGTGAGCTGGAAGAAGCAAATATTTCAAAGCAGTGCTTCCCTATCTTGCTAGAATGTGCTACCAAGGCAATCAAAGTTGCTACAGACTTGGAGACTGATCAGCCACGTTTAAGTGGCATGTCGGTGATAACACTGGAAGGCTTATTCTCATCACTAACTTATTTCTTCTCAAGAAATGGATCACACATGTTAGATTACCAGCTTTCCCTTCAGCGATGTGTTAGAAAAGATGATAGAAGAGGTTTTGGAAACTGGATGCATACTTTCAGTTTGTGGTGCTTGAATCCAGCTGTTGTTTTTAGAGATGTTGCTGATCTTTCTTTATCAGTCATATTGACTTCTGGGACACTGTCACCAATGCCATCCTTTTCTTCTGAGCTTGGAGTTCAGTTTGAAACTAGTCTCGAAGCTCCCCATGTAATTGACGTTGACTCACAGGTATGGCCTGCTATAATCTCCACTGGTCCTGGTAATTATCCTTTGAATGCAAGTTACAAAACTGCAGACGCATATGAATTCCAGGATGCAGTTGGAAGATCTTTGGAGGAAATCTTCAAGATTGTTCCAGGTGGATGTCTTGTGTTCTTTCCAAGTTATAAATTGATGGAAAAATTATGTAACCGTTGGTCAGAAACAGGTCAATGGTCTCGATTACATACAGAAAAGTCCCTTTTTGTTGAACCAAGGGGAGGAAGCCAGGATGATTTTGAACTTGTCTTAAAGGGGTATTATGACTCAATTCATCATGGCAAAAGACCTGCTTTAGGGAGGAAAAGAAGGATTAAAAAAATTGATCTAAATCACTTCTATACAGTTGATTCCCCACAGGATTCTAAAAAAGGAGGAGCTGCTTTACTAGGTGTTTGTCGAGGAAAGGTTTCTGAAGGAATTGATTTCTCTGATGAGAACGCCAGAGTAGTTATTATAGTTGGCATTCCATTTCCCAATATAAATGATGTTCAAGTTGCATTAAAGAAGAAATATAATGACACATTCAAATCATCCAAAAATCTCTTGAGTGGAAGTCAGTGGTATTGCCACCAAGCATTCCGAGCTTTAAATCAAGCAGCAGGGCGTTGTATACGGCATAGTCTTGACTATGGAGCAATCATCCTTTTGGATGAACGTTTTCGTGAAGAAAGAAATCGAGCATTAATTTCAAAGTGGCTAAGAAGACCCTTGAGAGTGTATGACAGCTTTAATCTGTCATTGGAGGGCCTAAAATCATTCTTTGAGGATGCCAAGGAACGGTTTAGCATGAATACAGTTCATATCTCGCAGAATTTGGTCTTTGACAGTGATGGTGTTCAAAACAAGGAACAAAATACGAGGTTGAAGAAAAATCAGAAACTGAACAAGTCTGTTAATGGACGTGAGAAAGATACATCAATGATTGAGGACAACATCTCTATTCCCACACTAAGCAGTCATGATCTTGCTGAGAGTCAGCTATTTGCTCAAAGGACTAGTAACACATACAATTTTGAAGATCATATCAATCCACAATGCTGTAATCTGACAGAAAGGTTGACTGAGAAATTGCCAGTGTCAATTACACATGAAGAAACCTCAGTTGTCAAGGAAACCCCATGTATAGATGTTGGTCATGATGCTGGTAGCCCTGATTACTCGGATGCCTACTCTAATTGCACTATAATTGAGACTTCTGCTCAATTTCCACCAGATCACTTATCAAGTCATCAGATGTCATTATCTAATGGAAGTAAAAGTTCTTCAAAGGTTCAGTCTTCAATAACAGTTACCCCTGAAAAGAATATAGCTACAACTAATATTCCAGAAATGGACTCATCTTTGAACTTGAGTGTTAATTCTCACAATCAGAAAAGGAGGAAGCCCTTCATAAACCTCATTGAGGAAGAAAATTATGGTGCACCTTGTGCCACTAGTCTTACATGGTACTCAAAAAGCTCAGTGGCTGTTACAGAGGCAACTCATGGAACTAAACCTGGTTTAGAGAGAAATTTGAAGTCACATTCTCCACAGATACCAACAAGCAATCTACCTGGTACATGTTCATTAACTGCCCCTCTACTTGACAAAAGGTTGCAGATATTTTGTTCACTCTGCAAAAACCCATTGGGGCGACCTGAGAATGATCTGTTTCTTACATGCTCTCTGATTTCATCATCAAAAGTTTACTTAAGATCCCTTTTGAAGCAGAAACTGAAAACATATACCACAGATACATCAGATAGCTTACCAGTTATTCTTACTGATTCTTCTTGTGTTGATCAACGTATTTTGAATAGAATACCTAAAAGTGCCCCGGAACAGGGTATTTGGTGTTTAGAAGATGGGTGTGTCTTCAGCACTGTTTTCTGCCCCTTCTGCAGTAATAGAAACAATTTGCTAGGAGTTCAAGTCATGGCAACCAATTCATCAAATGTTCAGTTACTTGAACAGATATTGTTTTACTTTGATTCTTTGGTAGTGAAGAACCATGAGGAAACAGGAAAAGGTGCTTCAGAGGAAGAGGACTTGTTGCCAGTTATTGACTCTGGCACGGATGAAGTTGCTGTCTTAAATTCCATTGACAGATATTCTTATCTTCCCCAACCGGCGAAATCAGAAGTCTGGAAGATTAGAAAATCAAAGCCAAGACTACGAAGCTCGCCTTATGCAGAAAGCCAAAGTTGA 3711 0.4069 MGSATNPNPNPNPNPKNVYHIGGLQVEFPYQPYGTQFAFMGRVISTLNRAQKEGHCHALLESPTGTGKSLSLLCSTLAWQQHYKSNPKPAPEPEDPLTHGGGFVPDTASDPQSEANNKKQKKKPAPTIYYASRTHSQISQVVRELRKTAYRVPMAVLAARKHYCTNKNILGKENLDEECKLLLKDQAMGCPEFKNAHKVKGHPSLQKGGSNEVHDIEDLVKVGQVVKGCSYYAARSMSDDAQLVFCPYSYIINPIIRGAMDVDIRGAIVILDEAHNIEDITRDAGSVDIEEDVLDKLQVELQQLCSSNTAIYQPLYEMTQGLTSWIEQKKNKLEKRDFQHYVSCWTGDKALRELEEANISKQCFPILLECATKAIKVATDLETDQPRLSGMSVITLEGLFSSLTYFFSRNGSHMLDYQLSLQRCVRKDDRRGFGNWMHTFSLWCLNPAVVFRDVADLSLSVILTSGTLSPMPSFSSELGVQFETSLEAPHVIDVDSQVWPAIISTGPGNYPLNASYKTADAYEFQDAVGRSLEEIFKIVPGGCLVFFPSYKLMEKLCNRWSETGQWSRLHTEKSLFVEPRGGSQDDFELVLKGYYDSIHHGKRPALGRKRRIKKIDLNHFYTVDSPQDSKKGGAALLGVCRGKVSEGIDFSDENARVVIIVGIPFPNINDVQVALKKKYNDTFKSSKNLLSGSQWYCHQAFRALNQAAGRCIRHSLDYGAIILLDERFREERNRALISKWLRRPLRVYDSFNLSLEGLKSFFEDAKERFSMNTVHISQNLVFDSDGVQNKEQNTRLKKNQKLNKSVNGREKDTSMIEDNISIPTLSSHDLAESQLFAQRTSNTYNFEDHINPQCCNLTERLTEKLPVSITHEETSVVKETPCIDVGHDAGSPDYSDAYSNCTIIETSAQFPPDHLSSHQMSLSNGSKSSSKVQSSITVTPEKNIATTNIPEMDSSLNLSVNSHNQKRRKPFINLIEEENYGAPCATSLTWYSKSSVAVTEATHGTKPGLERNLKSHSPQIPTSNLPGTCSLTAPLLDKRLQIFCSLCKNPLGRPENDLFLTCSLISSSKVYLRSLLKQKLKTYTTDTSDSLPVILTDSSCVDQRILNRIPKSAPEQGIWCLEDGCVFSTVFCPFCSNRNNLLGVQVMATNSSNVQLLEQILFYFDSLVVKNHEETGKGASEEEDLLPVIDSGTDEVAVLNSIDRYSYLPQPAKSEVWKIRKSKPRLRSSPYAESQS* 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3363 1236 PANTHER FANCONI ANEMIA GROUP J PROTEIN 12 1088 - -
Lja5g3363 1236 SMART deadxpd 24 312 IPR006554 GO:0003678|GO:0016818
Lja5g3363 1236 MobiDBLite consensus disorder prediction 84 127 - -
Lja5g3363 1236 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 12 1088 IPR045028 -
Lja5g3363 1236 Pfam DEAD_2 130 293 IPR010614 GO:0003677|GO:0003678|GO:0005524
Lja5g3363 1236 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 22 344 IPR014013 GO:0005524
Lja5g3363 1236 SMART Cxpdneu3 550 730 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lja5g3363 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 724 IPR027417 -
Lja5g3363 1236 Pfam Helicase C-terminal domain 532 742 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lja5g3363 1236 Gene3D - 32 335 IPR027417 -
Lja5g3363 1236 SMART ultradead3 23 339 IPR014001 -
Lja5g3363 1236 MobiDBLite consensus disorder prediction 914 933 - -
Lja5g3363 1236 Gene3D - 509 753 IPR027417 -
Lja5g3363 1236 CDD SF2_C_XPD 496 728 - -
Lja5g3363 1236 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 267 276 IPR002464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3363 Lja-Chr5 65739068 65752784 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3363 K15362 - gmx:100779610 1874.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3363 5 65739068 65752784 Lja5g3363 5 65739068 65752784 ECH