Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3328 ATGGATCAACCAACACTATCATTGATTTCATTCTTACTAACACTTCATCTTTCACTCTCAGGGGTAATTTCAACGACATTTACTTTTGTTAACAAATGTGACTACACAGTGTGGCCAGGCATTCTTTCAAACGCCGGTGTTCCTCCTCTTTCAACCACCGGCTTCGTCCTTCAAACCGGCGAGACAAGCGCCATCGCCGCACCAACCTCCTGGGGCGGCCGCTTCTGGGGGAGAACCCTCTGCTCCCAGGACGACTCCACCGGAAAATTCTCCTGCGTCACCGGCGACTGCGGCTCCGGCAAGCTCGAGTGCGCCGGCAACGGGGCCCTACCGCCGGCCACGCTGGCGGAGTTCACGCTTGACGGCGCCGGAGGGCTAGACTTCTTCGACGTCAGCCTCGTCGACGGCTACAACGTGCCGATGCTGGTGGTTCCCCAGGGCGGATCCGGCGACAACTGCACCGCGACGGGATGCATCGGCGATCTGAACGGCGCGTGTCCGTCGGAGCTGAGGGTGGACGGGAAGCAGGGCGCCGTGGCGTGTAAGAGCGCGTGTGAGGCGTTTAACACGCCGGAATATTGCTGCAGCGGCGCGTATGGGACACCGGATACTTGCAAACCTTCTTCTTACTCTGAGGTGTTCAAGAGCGCTTGCCCACGCGCGTATAGCTACGCGTACGATGACAAGACCAGCACCTTCACTTGTGCATCAGCAGATTATACCATCACCTTTTGTCCTTCTCCTACCACCAGTCAGAAAGCGTCACAGGGGCAAGACACGAAACAAGTGCCTGGCTCGCCCATGGATAACGACGACAACAGTAACAGTAACACGATGGTGTATGAAGGTGCTTCTTATGATCAAAATCAAGTATCACGTGCCACCGCCACGTCTACCCACGCTGTTGCCGCCACTATCACCATAGCTATTTGGCGGTTGTGCCAGCTATCTCCACTTACCTAA 963 0.5639 MDQPTLSLISFLLTLHLSLSGVISTTFTFVNKCDYTVWPGILSNAGVPPLSTTGFVLQTGETSAIAAPTSWGGRFWGRTLCSQDDSTGKFSCVTGDCGSGKLECAGNGALPPATLAEFTLDGAGGLDFFDVSLVDGYNVPMLVVPQGGSGDNCTATGCIGDLNGACPSELRVDGKQGAVACKSACEAFNTPEYCCSGAYGTPDTCKPSSYSEVFKSACPRAYSYAYDDKTSTFTCASADYTITFCPSPTTSQKASQGQDTKQVPGSPMDNDDNSNSNTMVYEGASYDQNQVSRATATSTHAVAATITIAIWRLCQLSPLT* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3328 320 Pfam Thaumatin family 31 246 IPR001938 -
Lja5g3328 320 Gene3D Thaumatin 25 246 IPR037176 -
Lja5g3328 320 MobiDBLite consensus disorder prediction 248 280 - -
Lja5g3328 320 SUPERFAMILY Osmotin, thaumatin-like protein 25 247 IPR037176 -
Lja5g3328 320 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Lja5g3328 320 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lja5g3328 320 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Lja5g3328 320 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lja5g3328 320 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Lja5g3328 320 ProSiteProfiles Thaumatin family profile. 24 246 IPR001938 -
Lja5g3328 320 PANTHER OS03G0233200 PROTEIN 5 273 IPR001938 -
Lja5g3328 320 SMART tha2 27 246 IPR001938 -
Lja5g3328 320 CDD TLP-PA 26 245 - -
Lja5g3328 320 PANTHER BNAA02G17480D PROTEIN 5 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3328 Lja-Chr5 64719580 64721679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3328 5 252 Receptor kinase-like Gene Family AT5G38280 54.941 4.26e-92 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3328 - - gmx:100787631 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3328 5 64719580 64721679 Lja5g3328 5 64719580 64721679 ECH