Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3238 ATGACTAATAACCAAGACCTTCCAAATTTACAAATTGACCCACTCATTTTTTTTATAACAGCCCACTATATTGGGCCTTGCAACCTTAAACCACAGCCCATTAAACCCCTGCGGAGTCTTCTTCATGTTCTCCTCCTCAGTCACCAACCACCGCGAACCGCACTCGAAAGAGTTCAACGGCCACCCAAAACCACCACCACCACCACCACCACCACCACCACCACCGTTCCTCAACTCAATCACGCACCCTTAACTCGAACCATGTCCATTTCGTTATCTTCACTCCCCGCTCGTCTCACACTCGTCGCTCTCTTCTCCGCCACCACCTTCTACTGCCTCTACAAATCTCGCCGCTTACGCCACCTCAAACTCTCTCTCTCCTCCTCAAACCCTAAACCCTCAATCCCCAAGATCCTCTTCCTCTCCCAAACCGGAACCTCCAAAACCCTCGCGCAACGCCTCCACAGCTTCCTCGCTTCCAACGGCGTCGTTTTCGAACTCCTCGATGCGCGGAGCTACGAGCCCGAAGACCTCCCCAAGGAAACGCTCCTCCTCCTCGTCGCTTCCACGTGGGAAGACGGGAAACCTCCGCCGGAGTCTCGCTTCTTCGCCAATTGGCTCGCTGAGAGCGCCGAGGATTTTAGGGTTGGTTCGTTGCTGCTGTCGCGGTTGAGGTTCGCAGTTTTCGGTGTTGGAAGCGGAGCTTATGGTGACTCGTTCAATGCCGTCGCGAGGGATCTTGTGAAGAGGATGAGGGAGCTGGGTGCGGCGGAGGTGGTTCCTCTCGGTGAAGGGGATGTTGATGAGGGAGACGTGGATGGGGTTTTCGACCGGTGGTGTGCGGAGGTGGTTGGGGTGTTGAAAGGTGGTGATGGTGTTGTTGTTGGTGGTGTGGAGAGTGATGAGGAAGGTGGTGTTTTGAGTAGCTCTGAAGAAGAGGAGGATTCTGAGGAGGAACCGGATATTGTTGATCTTGAGGACATTGCCGGTAAAGCTCCTTCGAGGAAGTCCGGGGCGAAAGTGGAGGAAACCAATGGAAAATTGAATGGAAAGAAGGAAATGGTGACTCCAGTGATTAGAGCAAATTTAGTGAAGCAGGGGTATAAAATTATTGGTTCACATAGCGGTGTCAAGATTTGTAGATGGACCAAGTCTCAGCTTCGAGGACGAGGTGGTTGCTACAAGCACTCATTTTATGGAATCGAGAGCCATAGGTGCATGGAGGCAACCCCTAGCTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCATACAAATCCAGTAGCGAAAAGTTGGCAGTGGGAGATGGATGATCCAATAGAGATTGTAAATTCTGCACTAGATCAACACAGAAATATGGTTAAACAGATGAAAGGAGTTCCTGGAGTCACGTTGGAGCGATTAAATGAAGGCCTTTCACCACGGCATTGTGCATTATCTCTTGTTGGTGAACCTATTATGTACCCAGAGATAAATGCACTAGTTGATGAGCTGCACAAAAAGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTCCCTGACAAAATTAAGTCGCTGAAGCCAATCACCCAGTTATATGTCAGTGTAGATGCTGCAACGAAGGACTCTTTAAAGGCAATTGATAGACCACTCTTTGGAGATTTTTGGGAGCGGTTCATTGATTCCTTGACTGCTCTGAAGGAAAAACATCAGCGAACTGTATACCGCCTGACCCTGGTGAAAGGTTGGAACACTGAAGAGGTTGATGCTTATTCCAAGTTCTTTAGTATGGGAGAACCTGACTTTATTGAAATCAAGGGAGTTACATATTGTGGCTCGACCGCTACATCAAAATTGACAATGGAAAATGTCCCTTGGCATGCTGATGTGAAAGCTTTCTCAGAGGCCCTGGCTCTGAAAAGCCAAGGGGAGTATGAAGTTGCTTGTGAGCATGTTCACTCATGTTGTGTCCTCTTGGCAAAAACTAAGAAGTTCAAAATTGATGGCCAGTGGTATACATGGATAGACTATGAGAAATTTCATGATCTGGTGGCTTCTGGAGAAACTTTTGATAGTAAAGATTACATGGCTGTCACACCATCCTGGGCCGTTTATGGATCAGAGGAAGGTGGATTTGATCCTGGACAATTAAGATATAGGAAAGAGAGACATCATAAGTCAAAGCCGCAATAA 2181 0.4796 MTNNQDLPNLQIDPLIFFITAHYIGPCNLKPQPIKPLRSLLHVLLLSHQPPRTALERVQRPPKTTTTTTTTTTTTVPQLNHAPLTRTMSISLSSLPARLTLVALFSATTFYCLYKSRRLRHLKLSLSSSNPKPSIPKILFLSQTGTSKTLAQRLHSFLASNGVVFELLDARSYEPEDLPKETLLLLVASTWEDGKPPPESRFFANWLAESAEDFRVGSLLLSRLRFAVFGVGSGAYGDSFNAVARDLVKRMRELGAAEVVPLGEGDVDEGDVDGVFDRWCAEVVGVLKGGDGVVVGGVESDEEGGVLSSSEEEEDSEEEPDIVDLEDIAGKAPSRKSGAKVEETNGKLNGKKEMVTPVIRANLVKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVAKSWQWEMDDPIEIVNSALDQHRNMVKQMKGVPGVTLERLNEGLSPRHCALSLVGEPIMYPEINALVDELHKKRISTFLVTNAQFPDKIKSLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALKEKHQRTVYRLTLVKGWNTEEVDAYSKFFSMGEPDFIEIKGVTYCGSTATSKLTMENVPWHADVKAFSEALALKSQGEYEVACEHVHSCCVLLAKTKKFKIDGQWYTWIDYEKFHDLVASGETFDSKDYMAVTPSWAVYGSEEGGFDPGQLRYRKERHHKSKPQ* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3238 726 SFLD Radical SAM 350 661 IPR007197 GO:0003824|GO:0051536
Lja5g3238 726 SUPERFAMILY Radical SAM enzymes 412 600 - -
Lja5g3238 726 Gene3D - 115 291 IPR029039 -
Lja5g3238 726 MobiDBLite consensus disorder prediction 305 321 - -
Lja5g3238 726 Pfam Radical SAM superfamily 411 590 IPR007197 GO:0003824|GO:0051536
Lja5g3238 726 Pfam Wyosine base formation 594 657 IPR013917 -
Lja5g3238 726 SUPERFAMILY Flavoproteins 138 287 IPR029039 -
Lja5g3238 726 SFLD tRNA wybutosine-synthesizing 350 661 IPR034556 GO:0008033|GO:0051539
Lja5g3238 726 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 93 723 - -
Lja5g3238 726 ProSiteProfiles Radical SAM core domain profile. 399 642 IPR007197 GO:0003824|GO:0051536
Lja5g3238 726 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 93 723 IPR034556 GO:0008033|GO:0051539
Lja5g3238 726 MobiDBLite consensus disorder prediction 705 726 - -
Lja5g3238 726 CDD Radical_SAM 411 587 - -
Lja5g3238 726 Pfam Flavodoxin 138 273 IPR008254 GO:0010181
Lja5g3238 726 Gene3D Aldolase class I 339 669 IPR013785 -
Lja5g3238 726 ProSiteProfiles Flavodoxin-like domain profile. 136 284 IPR008254 GO:0010181
Lja5g3238 726 MobiDBLite consensus disorder prediction 297 321 - -
Lja5g3238 726 PRINTS Flavodoxin signature 137 150 IPR001094 GO:0010181
Lja5g3238 726 PRINTS Flavodoxin signature 185 196 IPR001094 GO:0010181
Lja5g3238 726 PRINTS Flavodoxin signature 223 233 IPR001094 GO:0010181
Lja5g3238 726 PRINTS Flavodoxin signature 248 267 IPR001094 GO:0010181
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3238 Lja-Chr5 62668496 62673863 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3238 K15449 - gmx:100791920 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3238 5 62668496 62673863 Lja5g3238 5 62668496 62673863 ECH