Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3235 ATGTTTCATCTTTGGAGCAATTCTCAACAGGACCAAGAAAAGGACGAGCTTAATGCTGAATCCAAGATTAGAGAGCTCAAGGGTGCAATTGGGCCCTTATCAGGAAATAGCTTGAAGTACTGCACTGATGCTTGTTTGAGGAAATATCTGGAATCTCGCGACTGGAATGTAGACAAGTCCAAGAAGATGTTGGAGGACACACTGAGGTGGAGATCAACCTATAAGCCTGAGGAAATTCGTTGGCATGAGGTTGCAATGGAAGGGGAAACAGGGAAAGTGTACAGAGCAAGCTTTCATGACAGACAAGGAAGAGTTGTTCTTATTTTGAGACCTGGAATGCAGAACACTTTTTCAATGGAGAATCAGATAAGGCATCTTGTGTATCTTATGGAAAATGCCATGCTTAACCTTCCACTCGGTCAAGAGCAAATGGCATGGTTGATAGACTTCAATGGATGGTCATTGACGAACAGTGTGCCCATCAAAACAACAAGAGAAACCATCAACATTCTACAGAATCACTATCCCGAGAGGCTTGGCATAGCATTTCTTTACAACCCTCCTCGAGTTTTTGAAGCTTTTTGGAAGATAGTCAAGTACTTCATGGATACTAAGACATTTCAGAAGGTGAAGTTTGTCTATTCTGAGAATAAAGATAGCGTGGAGCTCATGAGGTCTTACTTTGATGAGGAAAATCTTCCCAAAGAACTAGGTGGAAAAAGCTTAATGAACTATAACCATGAGGAGTTCTCCAAATTAATGACTCAGGATGATTTAAAATGTGCAGCATTTTGGGAATCTGAGGACATGCACTCAAACCACATTTCTAAAGGGCATTTTTCCGCAGAGGTTGCTCCTGAGCCAGTTTGCAATGGAAGTTCAGCAACATGA 891 0.4164 MFHLWSNSQQDQEKDELNAESKIRELKGAIGPLSGNSLKYCTDACLRKYLESRDWNVDKSKKMLEDTLRWRSTYKPEEIRWHEVAMEGETGKVYRASFHDRQGRVVLILRPGMQNTFSMENQIRHLVYLMENAMLNLPLGQEQMAWLIDFNGWSLTNSVPIKTTRETINILQNHYPERLGIAFLYNPPRVFEAFWKIVKYFMDTKTFQKVKFVYSENKDSVELMRSYFDEENLPKELGGKSLMNYNHEEFSKLMTQDDLKCAAFWESEDMHSNHISKGHFSAEVAPEPVCNGSSAT* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3235 296 Pfam CRAL/TRIO domain 90 239 IPR001251 -
Lja5g3235 296 CDD SEC14 99 240 IPR001251 -
Lja5g3235 296 SUPERFAMILY CRAL/TRIO domain 81 253 IPR036865 -
Lja5g3235 296 Gene3D - 3 272 IPR036865 -
Lja5g3235 296 SUPERFAMILY CRAL/TRIO N-terminal domain 19 83 IPR036273 -
Lja5g3235 296 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Lja5g3235 296 SMART sec14_4 87 242 IPR001251 -
Lja5g3235 296 PANTHER GH16843P 6 292 - -
Lja5g3235 296 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 6 292 - -
Lja5g3235 296 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3235 Lja-Chr5 62640943 62644235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3235 40 234 Acyl Lipid Metabolism Gene Families AT1G55840 25.234 1.16e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3235 - - aprc:113847293 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3235 5 62640943 62644235 Lja5g3235 5 62640943 62644235 ECH