Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3216 ATGCTGGAAGCAACAATGGAAAGCTCTTCAGTCAATGGTGGTGGTGATCGATTCTCTCAGTTGCAGAGCTGTGGAGATAGCAGCGAAGAAGAGCTCTCCGTGCTCCCTCGTCACACCAAGGTGGTTGTCACCGGAAACAACCGCACCAAATCCGTACTCGTTGGTCTTCAGGGAGTTGTCAAGAAAGCCGTTGGCCTCGGTGGTTGGCATTGGCTGGTTCTTACTAATGGTATTGAAGTGAAGCTGCAGAGGAATGCCCTTAGTGTGATTGAAGCACCCACCGGGAATGAGGAAGATGATGACCTTGAATTTGAAAATACGCAGTGGAATGGATCCGATATGGCATCTGATGACACACAAAAGTCCCACAAATCAAGGCACAGGACACATAGATCATTAGGATCATCTCACAAGACTACAAGCAGGTCCTTCTCTGCTGATTCCCAGTCTAAAGGATCAATTTCTATGCCCCATGGATGGACGAAGGTTGACTTGAGCAAATTGGAGATGGCTGCATTGTGGAGATATTGGCGACACTTCAATCTGGTGGATGCTGTCCCTAACCCATCGAAAGAGCAGCTAGTAGATGTTGTTCAGAGGCATTTCATGTCCCAGCAAATGGACGAGTTGCAGGTGATTATGGGATTTGTCCAAGCTGCTAAGAGGCTCAAGACTATGTGCAAATGA 687 0.4774 MLEATMESSSVNGGGDRFSQLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENTQWNGSDMASDDTQKSHKSRHRTHRSLGSSHKTTSRSFSADSQSKGSISMPHGWTKVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAKRLKTMCK* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3216 228 PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30 SIN3-BINDING PROTEIN 1 228 - -
Lja5g3216 228 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 168 221 IPR025718 GO:0005515
Lja5g3216 228 Gene3D - 142 228 IPR038291 -
Lja5g3216 228 PANTHER SAP30 1 228 IPR024145 -
Lja5g3216 228 MobiDBLite consensus disorder prediction 136 156 - -
Lja5g3216 228 MobiDBLite consensus disorder prediction 107 156 - -
Lja5g3216 228 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3216 Lja-Chr5 62293835 62297154 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3216 - - tcc:18591339 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3216 5 62293835 62297154 Lja5g3216 5 62293835 62297154 ECH