Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3112 ATGATAAAGCGTTCACTCACCGTTGATGGCGCTGCGGATAACAACGTGAAAAGGGCGAAGGAGGAGGAGGAGTACGATGATGACAGCGTCGCCGCCACACGTGCGGCGGCGGTGTTTCTCGACGACAACGTTCTGTACGAGGTGATGAAGCACGTGGACGCGCGGTCGTTGGCGGTGGCGGGGTGCGTGAGCAAGCAGTGGAACAAGGCGGCGCGTGATGAGAGGCTGTGGGAGATGATCTGTACGAAGCAGTGGCCAAACACAGGGTGCGGGCAGGAACAGCTACGCTCTGTGATCCTCAGTCTCGGTGGGTTTCGTCGTTTGTACCCGCTCTGTGTCTGGCCTCTGTCTAAGCGCCACGTGTCTTCTACTTCTTCTTCTTCATCATCTTCTTCTTCTTATTGGCCTGTTGTTCCAAAGGTGATTCCTTCTTCCAACCCTCGTTTGGGGAAAGATGAGGTTCATCTCTCACTGTCACTTCTCTCAATTCGGTACTACGAGAAGATGAATTTCAATCATAAAAACAGATGA 531 0.5311 MIKRSLTVDGAADNNVKRAKEEEEYDDDSVAATRAAAVFLDDNVLYEVMKHVDARSLAVAGCVSKQWNKAARDERLWEMICTKQWPNTGCGQEQLRSVILSLGGFRRLYPLCVWPLSKRHVSSTSSSSSSSSSYWPVVPKVIPSSNPRLGKDEVHLSLSLLSIRYYEKMNFNHKNR* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3112 176 SMART fbox_2 40 80 IPR001810 GO:0005515
Lja5g3112 176 Gene3D - 30 135 - -
Lja5g3112 176 Pfam F-box-like 43 83 IPR001810 GO:0005515
Lja5g3112 176 PANTHER F-BOX ONLY PROTEIN 48-RELATED 11 172 IPR045118 GO:0019005|GO:0031146
Lja5g3112 176 PANTHER F-BOX PROTEIN GID2-LIKE 11 172 - -
Lja5g3112 176 SUPERFAMILY F-box domain 40 86 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3112 Lja-Chr5 60832604 60833497 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3112 K14495 - gmx:100802513 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3112 5 60832604 60833497 Lja5g3112 5 60832604 60833497 ECH