Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3106 ATGCAGAGGACACTATGGTTGCATACTTCCACAACATATCACCACCCCTTGATGGATCCAACTCCAGCATATCATCGATGGCATGACGCTTGGGCGTGCATTCTTGCTACTCTCATCATTTATATTACCGTTTCAGCTAGTCTCATGTATGGCTACTATGGCGATTCTCGCTTGTTGCTTGGCCCCAGCTCATCGCGTTTGGTAAAGGCAAACTCTGTTTTGGTAGATAGAATTGAAGTAACTAGTGAGTATAGTAATGATCTTTTGCTATATGGGTTCCATGAAAGGCCTGAGTTAAGCTCCCAAGCAAATTGGTCTACCTCAAAGTTTCTAGATGTTTCAGCATATAGTCGCAAGGGAATTTCTTTGTGGTTAAATAAGGGCTCCACCATTCGTATGAGGTGGGAAGCACAAGCTAGTAGTATAAGTCAACTTGAGGGGATAGTGATTAAAGGGGACAGGAAATTTGAAGAATTACAGCCAGAACTAAAGCTCTTACTTGATGCAATTGATTATAGTGAGACTATTAATGGTAAAGAAGCTGAATACATCATTGAGGAAGATGATAGGTACCACATAGGGATTCTAAACATGAATGCCAGGAGCATAATATTGACCATGAACATTAATGTTTCAGCAAAGGTTTATGATACTACCAAAGCCAAGAATATGTGCTCTACTGTGAATGGATCATGCAGACTTAGACTCTTCTTCCCTATCACAAATTATGTAATTCTCACAGCACCCGAAAATGGAGGTGATGGTGGATGGGTTATTGAAGTTTCTTTCATGGCTCGCATTATAGCCTATGTTGCTCTATTAGGGTTATTTATGATTGTTATATTTCTGACACTGAAATGCCTTGGAGTCCTTGATGGTGGTCATCACAACACTAATGTGATAGTGGACCCTTATGGAACAACAAGCAATGTACTTGCAGCACAAGAAACAACTGAAACTGAGCCCTTGACATGTGTGCAGACAAATACAGAGATTAAAATTCAAAAGGAAGAATCAGATACATCCAGTGTCTCTTCAGAGGAGTTATATGATGAAAAATTGTGTGTGATTTGTTATGATGAACAACGCAACTGCTTCTTTGTTCCTTGTGGCCATTGTGCCACTTGCTATGACTGTGCACAGAGGATTGTGGATGGGGAGACCAAGGTTTGTCCCGTGTGCCGGAGGCTTATTCACAAAGTCCGAAGATTATTCTTAAGTTAG 1224 0.4069 MQRTLWLHTSTTYHHPLMDPTPAYHRWHDAWACILATLIIYITVSASLMYGYYGDSRLLLGPSSSRLVKANSVLVDRIEVTSEYSNDLLLYGFHERPELSSQANWSTSKFLDVSAYSRKGISLWLNKGSTIRMRWEAQASSISQLEGIVIKGDRKFEELQPELKLLLDAIDYSETINGKEAEYIIEEDDRYHIGILNMNARSIILTMNINVSAKVYDTTKAKNMCSTVNGSCRLRLFFPITNYVILTAPENGGDGGWVIEVSFMARIIAYVALLGLFMIVIFLTLKCLGVLDGGHHNTNVIVDPYGTTSNVLAAQETTETEPLTCVQTNTEIKIQKEESDTSSVSSEELYDEKLCVICYDEQRNCFFVPCGHCATCYDCAQRIVDGETKVCPVCRRLIHKVRRLFLS* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3106 407 Pfam Domain of unknown function (DUF4792) 89 156 IPR032008 -
Lja5g3106 407 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 406 - -
Lja5g3106 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 407 IPR013083 -
Lja5g3106 407 ProSiteProfiles Zinc finger RING-type profile. 355 395 IPR001841 -
Lja5g3106 407 SUPERFAMILY RING/U-box 342 401 - -
Lja5g3106 407 Pfam Domain of unknown function (DUF4793) 181 283 IPR032010 -
Lja5g3106 407 Pfam Zinc finger, C3HC4 type (RING finger) 352 401 - -
Lja5g3106 407 PANTHER OS05G0521000 PROTEIN 23 406 IPR044586 GO:0004842
Lja5g3106 407 SMART ring_2 355 394 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3106 Lja-Chr5 60741915 60745777 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3106 - - cam:101496542 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3106 5 60741915 60745777 Lja5g3106 5 60741915 60745777 ECH