Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3023 ATGGCCGACGAGTCTCAATACTCCGTCGCCAGCGACACCACCCCACCCTCCTTGAAGCGCAAGTACGACGACAAGCCCCGTACCACCGGCTTCTCCGACGGACCCGACCCGCCTACCTCCTACAACAACGTCCCTCCCCCCGCCATCTCCGACTTCGAACTCGCCAAACAGAAAGCCCAAGAAGTCGCCGCTCGCCTCCTCGGCGGTGCTCCTCCCCTCGACGCCAAACGCCCTAAGGTCGACAACAACGGCGCCGCTCCAAGCCCCTACGATTCCTACGATGTGAAGAGTCAGTACTCTGCGCCTTCGTTTGCACCTTCGTACGGGCATCAAGGTGGGAGCAAGAAGATTGATATACCGAATGGGAGGGTGGGTGTTATCATTGGGAAAAGTGGAGAAACCATCAAGTACCTTCAGACGCAGTCTGGTGCCAAAATCCAAGTCACTCGCGACATGGATGCTGATCCGAATTCTTCAACTAGGGCTGTTGAGCTTATGGGTACTCCTGAGGCTATTGCCCATGCTGAGAAGCTCATTAATGAAGTTCTCACCGAGGCTGAATCTGGAGGTTCTGGCATTGTTACTAGAAGAATCCCTGGACAAGCTGGGGCTGATGAGTTTGTGATGAAGGTCCCGAATAACAAGGTTGGCCTTGTTATTGGTAAAGGAGGAGAAACAATTAAGAGTATGCAACAGTCGACTGGAGCAAGAATTCAGGTGATTCCTCTTCATCTTCCACCGGGTGACACATCCACGGAAAGAACATTAAAAATTGAAGGGAACTCTGAACAAATTGAGTCTGCAAAACAATTGGTTAATTCAGTCATCAACGGTGATAATCGCCTTAGGAATCCATCCATGTCTGGTGGTTATTCTCAGCAAGGTTACCAAGCTCGGACACCTTCTAGCTGGGCTCCTCCTGCAGCTCCGACTCAACAACCTGGTTATGGCTATGTGCAGCCTGGAGCGTACTCTGGTCCATCACCTCAGTATAACATGCCTCAACAACCATATGCAGGCTACCCTTCTCAGTCCGGTGGATATCCCACCAATTGGGACCACTCCACTGCACCTCCCCAGCAGTCTACTCATGCTGGGTATGATTACTATGGTCAACAGCAACAGCAAAATCCTGGTGCTCCTGCACCTCCAGCTGATGGAACTGCTTACAATTACAGTCAACCACCTTCCTCTGGTTATAGCCAACCTGGACAGGGCTATGCTCAAGATGGCTATGGTGCATATCAAGCGCCACCACATTCAGGGTATGGTCAACCACCATCATATGATCAGCAGCAAGGTTATAGCTCAGCCCCCTCCTATGGAAGCAACCCAGCACCAGATGCCAACACTGCAAACTACGGATCCCAGGGGGATTCAGCCCAAGTTCCGCCTGTCCAACCTCAGCAAGGTTATGGTAGCAGCCAACAGCCTAGCCCAAATGCTGCTAATTATCCACCACAAGGTGCTCCTCAGTCAGGCTATGGGGTGCCCCCAACCTCCCAAGCAGCTTATGGCAATCCACCTCAAGTACAGTCTGGTTATGGAGCTGGATATGGACCCCCTCAGGCTCAGAAGCCAAGTGGTACTCCACCGGTATACGGACAATCACAGTCACCTAACACAACAGGAGGCTATGGTCAAACTGGTGGGTATCCACCTTCCCATCCACCTTATGGTGGTGCTGTGCAACCAGGGTATGGTGCCCCGCCATATGGTGCTCCAGGTGGTCAATCTGGTTATGCTCAGGCTCCTCCAACATACGGCAGCAGTGCCTATGGTGCTGGTTATCCTCCGCCCTCAGCATATTCTGGTGATGGTAATGCAGGTGAAGGTGGGAATACTCGTGGAAGCAATGATGGGGCACCTGCACAGGCTGTTCAGCAGGGTAGTGTTGCTAAATCATCACCCCCTAGTTAA 1920 0.524 MADESQYSVASDTTPPSLKRKYDDKPRTTGFSDGPDPPTSYNNVPPPAISDFELAKQKAQEVAARLLGGAPPLDAKRPKVDNNGAAPSPYDSYDVKSQYSAPSFAPSYGHQGGSKKIDIPNGRVGVIIGKSGETIKYLQTQSGAKIQVTRDMDADPNSSTRAVELMGTPEAIAHAEKLINEVLTEAESGGSGIVTRRIPGQAGADEFVMKVPNNKVGLVIGKGGETIKSMQQSTGARIQVIPLHLPPGDTSTERTLKIEGNSEQIESAKQLVNSVINGDNRLRNPSMSGGYSQQGYQARTPSSWAPPAAPTQQPGYGYVQPGAYSGPSPQYNMPQQPYAGYPSQSGGYPTNWDHSTAPPQQSTHAGYDYYGQQQQQNPGAPAPPADGTAYNYSQPPSSGYSQPGQGYAQDGYGAYQAPPHSGYGQPPSYDQQQGYSSAPSYGSNPAPDANTANYGSQGDSAQVPPVQPQQGYGSSQQPSPNAANYPPQGAPQSGYGVPPTSQAAYGNPPQVQSGYGAGYGPPQAQKPSGTPPVYGQSQSPNTTGGYGQTGGYPPSHPPYGGAVQPGYGAPPYGAPGGQSGYAQAPPTYGSSAYGAGYPPPSAYSGDGNAGEGGNTRGSNDGAPAQAVQQGSVAKSSPPS* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3023 639 MobiDBLite consensus disorder prediction 529 549 - -
Lja5g3023 639 SMART kh_6 203 277 IPR004087 GO:0003676
Lja5g3023 639 SMART kh_6 111 184 IPR004087 GO:0003676
Lja5g3023 639 MobiDBLite consensus disorder prediction 278 639 - -
Lja5g3023 639 CDD KH-I 206 272 - -
Lja5g3023 639 MobiDBLite consensus disorder prediction 425 509 - -
Lja5g3023 639 MobiDBLite consensus disorder prediction 611 639 - -
Lja5g3023 639 MobiDBLite consensus disorder prediction 1 15 - -
Lja5g3023 639 ProSiteProfiles Type-1 KH domain profile. 204 272 - -
Lja5g3023 639 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 60 632 - -
Lja5g3023 639 MobiDBLite consensus disorder prediction 278 306 - -
Lja5g3023 639 MobiDBLite consensus disorder prediction 63 91 - -
Lja5g3023 639 MobiDBLite consensus disorder prediction 1 51 - -
Lja5g3023 639 MobiDBLite consensus disorder prediction 390 405 - -
Lja5g3023 639 CDD KH-I 114 179 - -
Lja5g3023 639 Gene3D K Homology domain, type 1 107 200 IPR036612 GO:0003723
Lja5g3023 639 Gene3D K Homology domain, type 1 201 301 IPR036612 GO:0003723
Lja5g3023 639 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 116 193 IPR036612 GO:0003723
Lja5g3023 639 Pfam KH domain 208 273 IPR004088 GO:0003723
Lja5g3023 639 Pfam KH domain 116 181 IPR004088 GO:0003723
Lja5g3023 639 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 60 632 - -
Lja5g3023 639 MobiDBLite consensus disorder prediction 325 381 - -
Lja5g3023 639 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 207 279 IPR036612 GO:0003723
Lja5g3023 639 ProSiteProfiles Type-1 KH domain profile. 112 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3023 Lja-Chr5 59176684 59181582 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3023 K13210 - gmx:100813135 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3023 5 59176684 59181582 Lja5g3023 5 59176684 59181582 ECH