Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3014 ATGTCGTCGTCTTCTTCTGGTACCGACGCTCTAGCTCTTGCGCGCAACCGCATCCTCTCAAGCAAGCTCTACTTCGATGTGCCTCCTTCCAAGGTTCCGCTTATCTACTCCGAGTCTTACGATATTTCATTTCTCGGCATAGAGAAACTGCACCCGTTTGATTCGTCCAAATGGGGACGAATTTGTGGATTTCTTGTCTCTTTTGATGTTTTGGATAAGAAATGCATTGTTGAGCCTCTTGAAGCTTCCAAGGATGATTTACTAGTGGTGCACTCAGAGTCGTACTTGAATAGCCTGAAGGAAAGTTCAAATGTTGCTACGATAATTGAGGTCCCTCCTGTGGCGTTATTTCCCAACTGTCTTGTGCAAAATAAAGTTCTTTTCCCATTCAGGAAGCAGGTTGGAGGAACTATACTGGCTGTGAAACTTGCAAAGGAGAGAGGATGGGCCATTAATGTAGGGGGAGGTTTTCATCACTGCTCTGCAGAAAAAGGAGGTGGATTTTGTGCTTATGCAGATATTTCCCTATGTATCCACTTTGCATTTGTTAGGTTGAATATTTCAAGAGTGATGATCATTGATCTTGATGCACATCAAGGAAATGGTCATGAAACGGACTTTGCTGATGATAGCCGAGTCTATATCCTGGATATGTATAACCCTGGAATATATCCTTGGGATTATGATGCAAGAAACTACATAAATCAGAAAGTTGAAGTAAAGAGTGGAACTCTTACAGAAGAGTATCTGCAGAAATTAGATGAGGCACTTGAGGTTGCTGCGCGAAGGTTTAAACCTGAGTTGGTAATTTATAATGCTGGAACTGACATCCTAGATGGTGATCCATTAGGAAGGTTGAAGATCAGTCCTGATGGAATTGCTCTTAGAGATGAGAAAGTTTTTCGGTTTGCTCGTGAGAAGAACATTCCTATAGTCATGCTCACTTCAGGTGGATACATGAAGTCCAGTGCCAGAGTCATTGCAGATTCAATTGTCAATCTCTCAAAAAAATGCTTGATAGAAACCAGAGGAGGTCCAAAGGCTTAG 1047 0.4222 MSSSSSGTDALALARNRILSSKLYFDVPPSKVPLIYSESYDISFLGIEKLHPFDSSKWGRICGFLVSFDVLDKKCIVEPLEASKDDLLVVHSESYLNSLKESSNVATIIEVPPVALFPNCLVQNKVLFPFRKQVGGTILAVKLAKERGWAINVGGGFHHCSAEKGGGFCAYADISLCIHFAFVRLNISRVMIIDLDAHQGNGHETDFADDSRVYILDMYNPGIYPWDYDARNYINQKVEVKSGTLTEEYLQKLDEALEVAARRFKPELVIYNAGTDILDGDPLGRLKISPDGIALRDEKVFRFAREKNIPIVMLTSGGYMKSSARVIADSIVNLSKKCLIETRGGPKA* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3014 348 Pfam Histone deacetylase domain 51 332 IPR023801 -
Lja5g3014 348 PRINTS Histone deacetylase superfamily signature 155 178 IPR000286 -
Lja5g3014 348 PRINTS Histone deacetylase superfamily signature 189 204 IPR000286 -
Lja5g3014 348 PRINTS Histone deacetylase superfamily signature 266 276 IPR000286 -
Lja5g3014 348 PANTHER HISTONE DEACETYLASE 11 8 343 - -
Lja5g3014 348 PANTHER HISTONE DEACETYLASE 11 8 343 - -
Lja5g3014 348 CDD HDAC_classIV 51 334 IPR044150 GO:0004407|GO:0016575
Lja5g3014 348 Gene3D Histone deacetylase domain 31 343 IPR037138 -
Lja5g3014 348 SUPERFAMILY Arginase/deacetylase 29 334 IPR023696 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3014 K11418 - gmx:100781276 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3014 5 59036407 59041838 Lja5g3014 5 59036407 59041838 ECH