Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3013 ATGGCCACAGATGACCCTGTTATTGAACAAGCGTTGTTGGGATCTAGGACCCTAGGAGAGCGTGTCTATGCGGCGTTGATGCCACTCATAGCTGTGGTTGAGGCTCTGGTGTTTGCTGTGGCAGGTTGTTTTAACCTTTGTCCACTCAGAAATGTTAATCAGGAACAGACACGTGAATGTACTGCTAAGGATTTTGCTCGCCTTGCGAAAGAAACCAGATTTACTGTTAATGAAGTGGAGGCCCTCCATGTGCTGTTTACAAAGTTAAGTTGCTCCGTAATTAATGATGGCTTGATTCACAAGGTGGAGCTTGGATTGGCACTATTTCAAAACCCAAATGGAGAAAGTCTTTTCCTGGATCGAGTTTTTGATCTTTTTGATGAAAAGAGAAATGGTGTTATCGAGTTTGAGGAATTTGTCCACGCGCTCAATGTTTTCCATCCTTATGCTCCTATAGAGGAAAAAAGTGATTTTGCATTTAAGCTCTATGACCTGAGGCAAACTGGGTTCATAGAACCAGAGGAAGTCAAGCAAATGGTTATAGCCATTCTGATGGAATCGGACATGCACCTTTCTGATGATCTTCTTGAAGCTATTGTTGATAAGACAATTGCTGATGTGGATAAGGACAATGATGGTAAAATCAGCAAAGAAGATTGGAAAGCTTTTGTGAGTAGAAATCCATCCCTCTTGAAGAACATGACACTTCCTTATTTGAAGAATATCACCACTGTGTTTCCTAGTTTTATTTTCACATCAGAGGCTGAAATTTGA 774 0.4109 MATDDPVIEQALLGSRTLGERVYAALMPLIAVVEALVFAVAGCFNLCPLRNVNQEQTRECTAKDFARLAKETRFTVNEVEALHVLFTKLSCSVINDGLIHKVELGLALFQNPNGESLFLDRVFDLFDEKRNGVIEFEEFVHALNVFHPYAPIEEKSDFAFKLYDLRQTGFIEPEEVKQMVIAILMESDMHLSDDLLEAIVDKTIADVDKDNDGKISKEDWKAFVSRNPSLLKNMTLPYLKNITTVFPSFIFTSEAEI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3013 257 ProSitePatterns EF-hand calcium-binding domain. 208 220 IPR018247 -
Lja5g3013 257 ProSiteProfiles EF-hand calcium-binding domain profile. 195 230 IPR002048 GO:0005509
Lja5g3013 257 SUPERFAMILY EF-hand 66 249 IPR011992 -
Lja5g3013 257 Gene3D - 64 257 - -
Lja5g3013 257 PANTHER CALCINEURIN B-LIKE PROTEIN 10 14 256 - -
Lja5g3013 257 Pfam EF hand 119 139 IPR002048 GO:0005509
Lja5g3013 257 SMART efh_1 155 183 IPR002048 GO:0005509
Lja5g3013 257 SMART efh_1 199 227 IPR002048 GO:0005509
Lja5g3013 257 SMART efh_1 118 146 IPR002048 GO:0005509
Lja5g3013 257 CDD EFh 158 225 IPR002048 GO:0005509
Lja5g3013 257 Pfam EF-hand domain pair 157 223 IPR002048 GO:0005509
Lja5g3013 257 PRINTS Recoverin family signature 169 187 - -
Lja5g3013 257 PRINTS Recoverin family signature 122 143 - -
Lja5g3013 257 PRINTS Recoverin family signature 215 235 - -
Lja5g3013 257 ProSiteProfiles EF-hand calcium-binding domain profile. 151 186 IPR002048 GO:0005509
Lja5g3013 257 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Lja5g3013 257 PANTHER CALCINEURIN B 14 256 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3013 Lja-Chr5 59026720 59032309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3013 14 202 EF-hand Containing Proteins AT4G33000 64.021 8.64e-84 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3013 K06268 - ini:109158374 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3013 5 59026720 59032309 Lja5g3013 5 59026720 59032309 ECH