Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3005 ATGAAGGAAGATAATAACCCATTAGAGAACAGGTCCAAACCTTCAAGATTTTCTGATCAAAACCAACCCCCACAACCAAAGCTTCAATCCTCCAAAGGTAGCAGCAACATGACCAACAACAATCACTCAAAACCTAGGTTGTGGGGTGCCCACATTGTCAAAGGCTTCTCAGCTGATAAGAAGACCAAAAATCCTCAGCAATCAACGGTTCCAACCAAGAAACAGACCCTGACAACAACGATTTCAGATGTTGTTGTTACAACCCAGAAGAATAACAACCCTTTTGTCCCTGCTCATTCCAGAGTCAAGAGGTCCCTCATAGGTGATTTATCATGCTCCCTGAATTCCCAGGTTCACCCTCATGCGTTCCCTTCGCATAGGAGGCAATCCTCTACTGATTTGTTCACTGAGCTTGATCATATGAGAAGCTTGCTGCAAGAATCGAAGGAGAGGGAGGGTAAGCTGAATGCTGAGCTGGTGGAGTGTAAGGGGAAGCAGAGTGAGGTTGATGAGCTTGTGAAGAAGGTTGCTTTGTTGGAAGAAGAGAAGACTAGTCTCAATGAGCAATTGGGTTCTTTGAAGAGTGTGTTGGAGAGAAAAGAGGAAGGGGTGAAAGGGGAACGCAGGGATTTTTGTTCTGTGCAGAATCTTGAGCTGGAGGTTGTGGAATTGAGGAGGCTGAATAAGGAGCTGCAGATGCAGAAGAGGAACCTCACTTGCAGGCTCTCTTCTCTTGAAGCTCAGTTGCCTTGTCCTGCCAACTCTTCAGAGAGTGACATTGTTGCAAAAATTAAAGCGGAGGCATCATTGCTCAGGCACACTAATGAAGACCTGTCTAAGCAAGTAGAAGGTTTACAAACAAGCAGATTGAATGAGGTTGAGGAGCTTGCCTACTTGAGGTGGGTGAATTCATGTCTGAGAAACGAGTTGAAGAATACATGTTCAGCATTGGAGTCTGATAAGCCATCTAGCCCTCAATCTGTTATGAGCAATAGTGGAGATGATTGTGTCAGTTCTTTCTCTGATCAAACCAATAGGTACTCAAAATGTAGTATTAGTACAAGTAGGTTCAGTTTGATAAAGAAGCCGAAAAAGTGGCCTATAACTAGTGACCATTTGTCGCAATTAGAGTGTCCAGATAGTCTCATTGAGAAAAATTGGATTGAACCTGAGGTAATGGGTAGAAGCCCCAGTAGAAGACACTCTATCAGTGGATCCAATTGCTCAGAGGAAGAGATTCTCCTCAATAAGAGAAGACAATCTGATATTTTTGTATGTTCAAAAGAAATGGAAAAGGATTCAGTGCCATTATCTGTTCAATCTGGTTTGGAGATTATCCAAAGACCACAATGTTTTGGCAACTTCCAAGAAGCTAACAAGCTTTTAGCTTCTTCAGATGTTGAGAAGAGGGCCCTACGCGTGCCGAATCCCCCTCCAAGGCCTTCTTCATGTTCAATTTCTAACATAACAAAGCAGGAAAGTTCAGCTCAAGTTCCTCCTCCCCCACCGCCACCTCCCCCACCACCTCCTTTGAATTTTGCATCAAGAAGTAACTCAGCGATGGTAAAACGAGCCCCACAAGTGGTGGAATTGTACCATTCACTAATGAAGAGAGATTCAAGGAAGGACTCTTCAAATGGAGGACTCTCTGATGCACCAGATGTTGCAAATGTTCGTAGTAGCATGATTGGAGAAATCGAGAACCGTTCATCACATTTGCTTGCTATAAAGGCAGATATTGAGACTCAGGGAGAATTTGTGAACTCATTGATTAAAGAGGTGAAAAATGCTGTTTATCAGAACATAGAAGATGTAGTGGCATTTGTGAAGTGGCTAGATGATGAACTCTGCTTCCTTGTGGATGAGAGGGCTGTCCTTAAGCATTTTGAGTGGCCTGAGAAAAAAGCTGACACATTAAGGGAAGCAGCATTTGGGTATCAAGATTTGAAGAAATTGGAATCTGAAGTTTCCTCTTACAAGGATGATCCCCGGATACCTTGTGACATTGCTCTAAAGAAAATGGTTGCATTATCAGAAAAGATGGAGCGTACAGTTTATAACCTTCTTCGCACAAGAGAGTCATTAATGCGTAATTGCAAGGACTTTCAAATTCCAATTGAATGGATGCTTGATAATGGAATCATTGGCAAGATAAAAATTGGCTCAGTTAAATTGGCCAAAAACTATATGAAAAGGGTAGCTATGGAGCTTCAAGCAAAGTCAGCATTGGATAAAGATCCTGCAATGGATTACATGCTTCTCCAAGGTGTGAGATTTGCTTTTAGAATCCATCAGTTTGCAGGAGGTTTTGATGCGGAAACAATGCACGCATTTGAGGAGCTTCGCAATCTTGCTTCTCTACTTAACAAAACATAA 2376 0.4251 MKEDNNPLENRSKPSRFSDQNQPPQPKLQSSKGSSNMTNNNHSKPRLWGAHIVKGFSADKKTKNPQQSTVPTKKQTLTTTISDVVVTTQKNNNPFVPAHSRVKRSLIGDLSCSLNSQVHPHAFPSHRRQSSTDLFTELDHMRSLLQESKEREGKLNAELVECKGKQSEVDELVKKVALLEEEKTSLNEQLGSLKSVLERKEEGVKGERRDFCSVQNLELEVVELRRLNKELQMQKRNLTCRLSSLEAQLPCPANSSESDIVAKIKAEASLLRHTNEDLSKQVEGLQTSRLNEVEELAYLRWVNSCLRNELKNTCSALESDKPSSPQSVMSNSGDDCVSSFSDQTNRYSKCSISTSRFSLIKKPKKWPITSDHLSQLECPDSLIEKNWIEPEVMGRSPSRRHSISGSNCSEEEILLNKRRQSDIFVCSKEMEKDSVPLSVQSGLEIIQRPQCFGNFQEANKLLASSDVEKRALRVPNPPPRPSSCSISNITKQESSAQVPPPPPPPPPPPPLNFASRSNSAMVKRAPQVVELYHSLMKRDSRKDSSNGGLSDAPDVANVRSSMIGEIENRSSHLLAIKADIETQGEFVNSLIKEVKNAVYQNIEDVVAFVKWLDDELCFLVDERAVLKHFEWPEKKADTLREAAFGYQDLKKLESEVSSYKDDPRIPCDIALKKMVALSEKMERTVYNLLRTRESLMRNCKDFQIPIEWMLDNGIIGKIKIGSVKLAKNYMKRVAMELQAKSALDKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNLASLLNKT* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3005 791 MobiDBLite consensus disorder prediction 11 45 - -
Lja5g3005 791 Coils Coil 162 196 - -
Lja5g3005 791 MobiDBLite consensus disorder prediction 1 46 - -
Lja5g3005 791 MobiDBLite consensus disorder prediction 496 513 - -
Lja5g3005 791 PANTHER PROTEIN CHUP1, CHLOROPLASTIC-LIKE 1 791 - -
Lja5g3005 791 SUPERFAMILY Formin homology 2 domain (FH2 domain) 500 606 - -
Lja5g3005 791 Coils Coil 214 248 - -
Lja5g3005 791 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 791 IPR040265 -
Lja5g3005 791 MobiDBLite consensus disorder prediction 471 516 - -
Lja5g3005 791 Coils Coil 261 281 - -
Lja5g3005 791 Coils Coil 781 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3005 Lja-Chr5 58934066 58938678 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3005 - - lja:Lj5g3v0402730.1 1490.71