Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2989 ATGTCTGAAAAACAACCATACCGAACTTCTTATCACTTTCAGCCCCAGCAAAACTGGATGAACGATCCAAATGGGCCTATGTACCACAAAGGTGTTTACCATTTTTTCTACCAATATAATCCCTATGCAGCAACCTTCGGAGAAAAGATGGTGTGGGCTCACTCTGTATCCTATGATCTCATCAATTGGATTCACTTGAATCATGCTCTTGAACCAACTGAACCCTATGACATCAATAGTTGCATATCAGGTTCTGTCACTATTCTTCCAGGGGAAGTACCTGCCATTTTTTACACAGGGATTGATGATAAGAAGCATCAAGTACAGAACTTGGCATTTCCAAAGAATCTCTCAGACCCTTTCTTGAGGGAATGGGAGAAACACCCTCAAAACCCTGTCTTGACTCCACCTGCTGGAGTTGAAGTGGATAATTTCAGAGACCCTTCCACTGCTTGGAAGGGAGAGGATGGAAAATGGAGAGTAGTCATTGGTGCTCACCATGGTGATGAAGGCAAAGTGATTCTCTTCCAAAGTGAAGATTTTATTAATTGGACATTGTATCCAATTCCAAAACCCTTTTTTGCAATAGACAATACTGGAGTTGAATGCCCTGATTTCTTTCCTGTGTCCATAAATAGCACAAATGGGGTTGATACCTCTGTCCAAAATCCTGGTGTTAGGCATGTGTTGAAGATAAGCCATCAAGAAAAACAGCTTGAGTACTATTTTATTGGTAAATATGACTCTGATCACGAAAACTTCATTCCTGATGTTAAATTCACAGGAACTAGTCTGGACTTATGTTTAGACTATGGTAACTTTTATGCTTCCAAGTCATTTTTTGACTATGCCAAGAGCAGGAGAATATTGTGGGGATGGGTGAAGGAAAATGAAACCTCACAGGATGATATTAAAAAAGGATGGGCTGGGCTGCAGTCTATTCCAAGGCAAATTTGGCTAGACAAAAGTGGGAAGCAATTGGTACAGTGGCCAATTGAAGAGGTGGAAAAACTACGTGGCACACAAATTAGTATAAAGGGTGAGAAACTCCTTAGTGGATCAACTCTTGAAGTCTCTGGCATCACGGCATCACAGGAAAGTAAATTGGTGCTACATTTTTTCCAAATTTTCACTGATAAATTTTCTGGTCATGTACAATATTAA 1164 0.4021 MSEKQPYRTSYHFQPQQNWMNDPNGPMYHKGVYHFFYQYNPYAATFGEKMVWAHSVSYDLINWIHLNHALEPTEPYDINSCISGSVTILPGEVPAIFYTGIDDKKHQVQNLAFPKNLSDPFLREWEKHPQNPVLTPPAGVEVDNFRDPSTAWKGEDGKWRVVIGAHHGDEGKVILFQSEDFINWTLYPIPKPFFAIDNTGVECPDFFPVSINSTNGVDTSVQNPGVRHVLKISHQEKQLEYYFIGKYDSDHENFIPDVKFTGTSLDLCLDYGNFYASKSFFDYAKSRRILWGWVKENETSQDDIKKGWAGLQSIPRQIWLDKSGKQLVQWPIEEVEKLRGTQISIKGEKLLSGSTLEVSGITASQESKLVLHFFQIFTDKFSGHVQY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2989 387 Pfam Glycosyl hydrolases family 32 N-terminal domain 12 331 IPR013148 -
Lja5g2989 387 SMART glyco_32 12 387 IPR001362 GO:0004553|GO:0005975
Lja5g2989 387 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 3 366 - -
Lja5g2989 387 CDD GH32_Fruct1-like 18 320 - -
Lja5g2989 387 SUPERFAMILY Arabinanase/levansucrase/invertase 3 332 IPR023296 -
Lja5g2989 387 ProSitePatterns Glycosyl hydrolases family 32 active site. 12 25 IPR018053 GO:0004553|GO:0005975
Lja5g2989 387 Gene3D Glycosyl hydrolase domain; family 43 16 352 IPR023296 -
Lja5g2989 387 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV6 3 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2989 Lja-Chr5 58636785 58640864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2989 22 365 Glycoside Hydrolase AT1G55120 55.874 2.08e-136 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2989 K01193 - pvu:PHAVU_001G036700g 613.224