Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2966 ATGGGTGAGGCTCCAGAGGTTTTCTACATCAATGGGTTCTCAAAGTTTGGCCATGAAACTCAACAAAACAATGGTAACCACCAGAACCATGACTCTACCTGGTATGAGGAAGTCATTGATGATGATCTCAAATGGTCTTTTAAACTCAACAGCGTGCTCCATGAAGCGATTAGCGAGTACCAGGACATAGCTCTTTTAGATACAAAGCGTTTTGGAAAGGCCTTGGTGCTTGATGGGAAGATGCAGAGTGCTGAAAATGATGAATTCATTTATCATGAGTGTTTGATGCACCCCCCTCTTTTATTTCATCCCAACCCCAAAACGGTGTTTATAATGGGAGGTGGTGAAGGGTCTGCAGCAAGGGAGGCCCTCAGACACAAGTCAATGGACAGAGTAGTCATGTGTGACATTGACAAGGTGGTGGTAGATTTCTGCAGAAAATACTTGACCGCAAACAGGGAGGCATTTTCTAATAAGAAGCTGGACCTTGTCTTCAATGATGCTAAGGCTGAATTAGAGAAGAGAAAGGAGAAGTTTGATATCATTGTTGGAGATTTGGCAGACCCACTTGAAGATGGGCCTTGCTATCAACTCTACACAAAATCCTTTTATGAGAAAGTGGTGAAGCCCAAACTCAATGAGAATGGAATTTTTGTGACCCAGGCTGGACCAGCAGGTATCTTCACACACAAGGAGGTCTTCACTTCTATATATAACACAATCAAACATGTCTTCAAATATGTGATTGCATACACAACTCATGTACCCTCATTTGCTGACACATGGGGATGGGTTATGGCTTCAGATCAACCCCTGTCAATTAGTGCTGAGGTAATGGACAAAAGGATCAATGCAAGAATAGATGGGGATCTGCTCTATCTGAATGGTGCTTGGTTCAAATCATCTACCATCATGAATAAGACTGTTTCACATTCATTGCAGAATGAAACTCACGTCTACACAGAAGAAAATGCTAGATTTGTTCCTGGACATGGCATGGCTTATCGCATCTGA 1014 0.425 MGEAPEVFYINGFSKFGHETQQNNGNHQNHDSTWYEEVIDDDLKWSFKLNSVLHEAISEYQDIALLDTKRFGKALVLDGKMQSAENDEFIYHECLMHPPLLFHPNPKTVFIMGGGEGSAAREALRHKSMDRVVMCDIDKVVVDFCRKYLTANREAFSNKKLDLVFNDAKAELEKRKEKFDIIVGDLADPLEDGPCYQLYTKSFYEKVVKPKLNENGIFVTQAGPAGIFTHKEVFTSIYNTIKHVFKYVIAYTTHVPSFADTWGWVMASDQPLSISAEVMDKRINARIDGDLLYLNGAWFKSSTIMNKTVSHSLQNETHVYTEENARFVPGHGMAYRI* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2966 337 Pfam Spermidine synthase tetramerisation domain 34 85 IPR035246 -
Lja5g2966 337 Gene3D Vaccinia Virus protein VP39 85 336 IPR029063 -
Lja5g2966 337 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 32 269 IPR030374 -
Lja5g2966 337 Gene3D Spermidine synthase, tetramerisation domain 32 84 IPR037163 -
Lja5g2966 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 33 312 IPR029063 -
Lja5g2966 337 Hamap Polyamine aminopropyltransferase [speE]. 33 314 IPR001045 GO:0003824
Lja5g2966 337 Pfam Spermine/spermidine synthase domain 88 266 - -
Lja5g2966 337 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 1 336 - -
Lja5g2966 337 PANTHER BNAA02G04280D PROTEIN 1 336 - -
Lja5g2966 337 CDD AdoMet_MTases 113 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2966 Lja-Chr5 58203433 58209520 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2966 K18787 - gmx:100784972 623.239