Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2961 ATGGACTTCAGGTTGATGGGTTTGGATTCTCCATTGTTCCACAATCTCCACCACATGATGGACATGTCGGATGACACCGCGTTGGACAATAAGACACACAATGCTCCGACAAGGACTTATGTTCGAGATGCGAAGGCAATGGCGGCAACACCTGCGGACGTGAAAGAGAATCCGAATTCGTACGTTTTCGTGATCGACATGCCGGGGTTGAAATCAGGGGACATTAAGGTTCAGGTGGAAGATGACAATGTGCTTGTGATAACTGGTGAGAGGAAGAGGGAGGAAGAGAAAGAAGGGGTTAAGTATTTGAGGATGGAGAGAAGGGTTGGCAAATTCATGCGCAAATTCGTGCTTCCTGAGAATGCCAACATTGATGCTGTTTCTGCTGTGTGCCAAGATGGGGTACTCAGTGTCACTGTGCAGAAATTGCCACCACCTGAGCCTAAGAAGCCAAGGACTATTGAAGTTAAGATTGCTTGA 480 0.475 MDFRLMGLDSPLFHNLHHMMDMSDDTALDNKTHNAPTRTYVRDAKAMAATPADVKENPNSYVFVIDMPGLKSGDIKVQVEDDNVLVITGERKREEEKEGVKYLRMERRVGKFMRKFVLPENANIDAVSAVCQDGVLSVTVQKLPPPEPKKPRTIEVKIA* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2961 159 Pfam Hsp20/alpha crystallin family 53 157 IPR002068 -
Lja5g2961 159 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 43 157 IPR002068 -
Lja5g2961 159 SUPERFAMILY HSP20-like chaperones 15 151 IPR008978 -
Lja5g2961 159 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 158 - -
Lja5g2961 159 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 158 - -
Lja5g2961 159 Gene3D - 7 158 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2961 Lja-Chr5 58133877 58134600 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2961 K13993 - gmx:100500666 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2961 5 58133877 58134600 Lja5g2961 5 58133877 58134600 ECH