Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2960 ATGGACTTCAGGGTGATGGGTTTGAATTCTCCATTGTTCCACACTCTTTATGACATGATGGACATGTCGGACGACACCGCATCCGACAAGACACTCAATGCTCCGACAAGGACATACGTTCGTGATGCGAAGGCAATGGCGGCAACACCTGCGGACGTGAAGGAGAATCCGAATTCGTATTTTTTCGTGATCGACATGCCCGGGTTGAAATCTGGGGACATTAAGGTTCAGGTGGAAGATGACAATGTGCTTGTGATTACTGGTGAGAGGAAGAGGGAGGAAGAGAAAGAAGGAGTTAAGTATTTGAGGATGGAGAGAAGGGTTGGCAAATTCATGCGCAAATTCGTGCTTCCAGAGAATGCCAACACTGATGCTATCTCTGCTGTGTGCCAAGATGGAGTGCTTAGTGTCACTGTGCAGAAATTGCCACCACCTGAGCCCAAGAAACCAAGGACTATTGAAGTCAAGCTTGCTTAA 477 0.4759 MDFRVMGLNSPLFHTLYDMMDMSDDTASDKTLNAPTRTYVRDAKAMAATPADVKENPNSYFFVIDMPGLKSGDIKVQVEDDNVLVITGERKREEEKEGVKYLRMERRVGKFMRKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIEVKLA* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2960 158 Pfam Hsp20/alpha crystallin family 52 156 IPR002068 -
Lja5g2960 158 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 157 - -
Lja5g2960 158 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 42 156 IPR002068 -
Lja5g2960 158 Gene3D - 6 156 IPR008978 -
Lja5g2960 158 SUPERFAMILY HSP20-like chaperones 28 150 IPR008978 -
Lja5g2960 158 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2960 Lja-Chr5 58118644 58119472 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2960 K13993 - gmx:100500666 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2960 5 58118644 58119472 Lja5g2960 5 58118644 58119472 ECH