Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2956 ATGGATTTCAGGATGATGGGTTTGGAGTCTCCATTGTTCCACGCTCTGAACCAGATGATGGACGTTTCAGATCACGACACTGCATCCGACAAGACACACAATGCCCCAACACGAACTTATGTTCGAGATGCAAAGGCGATGGCGGCAACACCTGCGGACGTGAAGGAGAATCCGAATTCGTACGTTTTCGTGATCGACATGCCGGGGTTGAAATCAGGGGACATTAAGGTTCAGGTGGAAGATGACAATGTGCTTGTGATAACTGGTGAGAGGAAGAGGGAGGAAGAGAAAGAAGGGGTTAAGTATTTGAGGATGGAGAGAAGGGTTGGCAAATTCATGCGCAAATTCGTGCTTCCTGAGAATGCTAACACAGATGCTGTCTCTGCTGTGTGTCAAGATGGGGTTCTCAGTGTTACTGTGCAGAAATTGCCACCACCTGAGCCTAAGAAGCCAAGGACTATTGAGGTTAAGGTTGCTTGA 480 0.4813 MDFRMMGLESPLFHALNQMMDVSDHDTASDKTHNAPTRTYVRDAKAMAATPADVKENPNSYVFVIDMPGLKSGDIKVQVEDDNVLVITGERKREEEKEGVKYLRMERRVGKFMRKFVLPENANTDAVSAVCQDGVLSVTVQKLPPPEPKKPRTIEVKVA* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2956 159 Pfam Hsp20/alpha crystallin family 53 157 IPR002068 -
Lja5g2956 159 SUPERFAMILY HSP20-like chaperones 19 151 IPR008978 -
Lja5g2956 159 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 158 - -
Lja5g2956 159 Gene3D - 5 158 IPR008978 -
Lja5g2956 159 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 43 159 IPR002068 -
Lja5g2956 159 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2956 Lja-Chr5 58051978 58052592 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2956 K13993 - gmx:100500666 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2956 5 58051978 58052592 Lja5g2956 5 58051978 58052592 ECH