Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2954 ATGATGAAACCCATGTTTGAGTCTGGAAACCAAGATGCTGATGATGGTAGTGGAGACACTAATGGGAATAATGGTGAGCAGCTGCTGCATGACATTGAAGAAATAAGCAAAGCTCTTTACTTGCACAATACCCCTTTTAAGGCTTCATTCTCCTCGGTCGATAATCGATCTAAGTCTGCTGGAAAGACTCGTGTGTCGAAACGTCAAGTTGACTCTACCACGAGGTTTCGAAGAGAAGATCTGTTTCCCAGGGACAAGAAGTTTTTGTCTTCAGCATGGATCTGGAAGAAGCCCTTGAAGGCTTTGGCCCATGTTGGTCATCAAAAGTTTAATTGTTGCTTTAACCTTCATGTCCACTCAATTGAGGGGTTGCCGTTGAATTTCAATGGCATTAGCTTAAGTGTGAACTGGAAAAGGAAGAGCAGCATTTTACGGACGCGCCCGGCAAGGGTTCTCAAGGGAGCTGTCGAGTTCAACGAAACTTTGACACATAGATGTTCTATTTATGGTGGCCGCACAGGGTCTGGTCACGCTCTCAAGTACGAGTCCCGGCGTTTCTTGATTTATGCTTCCATTGTTGGGGCACCTGAACATGACCTCGGGGACCACCATGTTGATGTCACAAGGATTTTACCTCTGACTTTAGAAGAGTTATTGGGTGATAAAAGATCAGGGGCATGGAGCACTAATTTTAGGTTGGCAGGAAAGGCTTTAGGAGCTAGCTTAAATGTTAGTTTCAGTTATCAAGTGATGAATGATGAGTTGATCGGACTTGGTGGCAATAATCTGAATGATCATAACCTTAGTAACTTAAATGTTATGGGTTGTACTCCTAGCAATAGGGAAGTAAAGCTTTGGCAAGGTGGGAGTTTTCCACATGATGTATATAATGGATCGGTCCTCCCTTCTCATTCCAATGGTGATATGTTACCCCATGAAGCATTGTTGAAATCTGGCTTTAGTATTTCCAAATCAATGACTATACTATATCAAAAACTTGATGAGGGGAACTTCCATACTTCAGAATCAGAAGACTCAGAACATTTGGAACCACTTAAATCCCAAATTCTTCTGAAACCAGACTCACCTCGAGAATCAAATCTAGACGACTCTGATGATACTGAATTTTCCATTACTGAACAAGGAATAGAAACACTAGAAGAGGATTCCTTGAAACTTGATCAGACAGGAGTTCAAACATTTGATATGTCAACAGTCGAAATCATTGATGTGGATGAGATTCTTAAGGATGATGACATATTTGATGAGAATAACACAAGCTTTGATTCAATGGATGCCATATGCAGTAGTTATGTGAATGGGGCCATAGCAGATGACAGCAAACATATATGCATGAAGATTGTGGATACAGTTCCTGAGACATCAGATTCTTTTGGCAAAGAACACTACTTGAGTATTAAATCAAATTATAAATCACATAAAATGGCAAAAAAATCACATAGCTTGGATGATATCATTGAATCCGTTGCGGGTGATTTCCTAAACATGCTGGCCATGGAGAATGGTTCATTCGGCTCAGGTTGTGGTGGTGATCCCCAGTCTCCCAGAGAGCAGCTTTTGAGACAGTTTGAACAAGAAGCACTAGCTTCAGGTGATTTTACTTTTGACTTTGATGCCAATGGGGAGGAATTGGGGACAGATACACTTGAAGATGGCTTCGGGTATAGTGCCGAGGATTCTGATTTGTCTTCAATTATTCAAGCTGCTGAAGAGGAGTATGCAACAGAGCACCAGTCAATAATGCAGAGAAGGAAGGCCAAACTTCTTGAAGATTTGGAGACTGACTCATTGATGCAACAATGGGGTTTAAATGAGAGGGACTTTGAAAATTCTCCGCGAACTTGGTCTGGTGGGTTTGGAAGCCCAATTGAACTGTGTGACAATGAACCATCCATGCTGCCTTCAATTGGACAAGGACTTGGTTCATTTGTTCAAACTAGGGGTGGAGGATTTTTGAGGTCCATGCGCCCTTCCCTCTTCGTGAATGCTAAAAATTGCGGAAACCTCATCATTCAGGCTTCTAATCCAGTTGTTCTACCTGCGAAAATGGGTAACGACATATTGGAGATACTGCTGCATGTGGCATCTTCTGGAGTTGAAGATCTGTGTGATCATATCTATAAATTAATGCCTTTGAAAGATATCACTGGAAAATCCATCAAGCATATTTTGCGGGATCATAGAACCCCCAAGGGGGCTCTTCAGAGACAGGGATCATGGGAAGATTTGTTTGAAGAATGTCCACAAGGTTATTTAACAGACGAAAGCATGGGTTTGGATTTTGTGCCTCTAGAAGCTATAGCTCCTATGACTATTGATAAGATTGAAGCCCTTTTGATAGAAGGGTTGAGAACACAGTATGACATGTCGAACGAGCAGGCACCATCATACATCCATTCGCAACATACAAACACGCCTGACTTTGGAGACATAAGAGCCAACATGAGAAGGTATCCCACATTAGAAAAAGTTACTAAATTGCAGTTAGAAGATAGTGGTGAAATTTACAATGATGTTGATGGATTGATGGGTCTGTCACTAACATTGGACCAGTGGTTGAGGTTAGATTCTGGCATTATCGATGCAGATCAGAATTTGGGGAAAATGTTGAAGATCCTTAAAGCACACCATTGTAAAATCCCAGAAATAGATGATGACAGGTTGAAAAATGCAGTGGACGAGGTAAAAACGTGCGGCGAAAAGCACGGACTCCTGGGGAATCACATAACAGTGGCTTTTATGATCCAGCTTAGAGATCCACTGCGAAATTATGAACCGGTTGGCGTTCCAATGCTGGTTTTAACTCATGTGGAAAGAGCTGACACACATGCTATGCAGCAAGACCACAGCAACTTTCTTGCGAGACAGGAAAAGGGAATGGAGGATGACGAAACCTCTCGGTTCGGATTTAGAATCAAGGAGATTGATCTTGCAGGAATCATTACCAAAGCTGGAAAGACGCACCTTTGGGGTACAGCGGCTCAGCAGCAATCTGGGTACCGTTGGTTGCTTGCGAGTGGCGTGGGGAGTACTGTCAAACATGCATCTTCAAAATTGAAGGCAATTGTTAGATCTTCTCCATTGATTACCAAGAAGCTGCTGAATCAGGATGTACTTTGGAGCATTTCTTATGTTGATAACAACATGAGGACTAATGGTAAAGAGTTGGCAGCTGAAAATGTACACATTCGGAACCCTGATGTCCTCTTTCCAAGTTGA 3240 0.4225 MMKPMFESGNQDADDGSGDTNGNNGEQLLHDIEEISKALYLHNTPFKASFSSVDNRSKSAGKTRVSKRQVDSTTRFRREDLFPRDKKFLSSAWIWKKPLKALAHVGHQKFNCCFNLHVHSIEGLPLNFNGISLSVNWKRKSSILRTRPARVLKGAVEFNETLTHRCSIYGGRTGSGHALKYESRRFLIYASIVGAPEHDLGDHHVDVTRILPLTLEELLGDKRSGAWSTNFRLAGKALGASLNVSFSYQVMNDELIGLGGNNLNDHNLSNLNVMGCTPSNREVKLWQGGSFPHDVYNGSVLPSHSNGDMLPHEALLKSGFSISKSMTILYQKLDEGNFHTSESEDSEHLEPLKSQILLKPDSPRESNLDDSDDTEFSITEQGIETLEEDSLKLDQTGVQTFDMSTVEIIDVDEILKDDDIFDENNTSFDSMDAICSSYVNGAIADDSKHICMKIVDTVPETSDSFGKEHYLSIKSNYKSHKMAKKSHSLDDIIESVAGDFLNMLAMENGSFGSGCGGDPQSPREQLLRQFEQEALASGDFTFDFDANGEELGTDTLEDGFGYSAEDSDLSSIIQAAEEEYATEHQSIMQRRKAKLLEDLETDSLMQQWGLNERDFENSPRTWSGGFGSPIELCDNEPSMLPSIGQGLGSFVQTRGGGFLRSMRPSLFVNAKNCGNLIIQASNPVVLPAKMGNDILEILLHVASSGVEDLCDHIYKLMPLKDITGKSIKHILRDHRTPKGALQRQGSWEDLFEECPQGYLTDESMGLDFVPLEAIAPMTIDKIEALLIEGLRTQYDMSNEQAPSYIHSQHTNTPDFGDIRANMRRYPTLEKVTKLQLEDSGEIYNDVDGLMGLSLTLDQWLRLDSGIIDADQNLGKMLKILKAHHCKIPEIDDDRLKNAVDEVKTCGEKHGLLGNHITVAFMIQLRDPLRNYEPVGVPMLVLTHVERADTHAMQQDHSNFLARQEKGMEDDETSRFGFRIKEIDLAGIITKAGKTHLWGTAAQQQSGYRWLLASGVGSTVKHASSKLKAIVRSSPLITKKLLNQDVLWSISYVDNNMRTNGKELAAENVHIRNPDVLFPS* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2954 1079 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 107 252 IPR019448 -
Lja5g2954 1079 ProSiteProfiles C2 NT-type domain profile. 102 250 IPR019448 -
Lja5g2954 1079 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 7 1079 IPR039614 -
Lja5g2954 1079 MobiDBLite consensus disorder prediction 13 27 - -
Lja5g2954 1079 MobiDBLite consensus disorder prediction 339 354 - -
Lja5g2954 1079 MobiDBLite consensus disorder prediction 339 375 - -
Lja5g2954 1079 MobiDBLite consensus disorder prediction 1 28 - -
Lja5g2954 1079 MobiDBLite consensus disorder prediction 50 70 - -
Lja5g2954 1079 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 2 7 1079 IPR039823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2954 Lja-Chr5 58041457 58045585 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2954 - - lja:Lj0g3v0074399.1 1884