Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2944 ATGAGCTTATCCAATAAAGGATCCCAAACAGACACAAAACTCGGCACCCCAAGCAGAGCAACTGCTTTGAATCCAAATGCAGCAGAATTTGTTCCTTTTTCCCTCAGAACATTGTCATCTGGAAGTACTAGCTCGGTAGATGCAACAAGGCTTACTACTGCTGGAACTCTTGGAAAAGCAGTTTTAGATCGTACAGAATCGTCCATTTCAAATAATTCAGATGATGAGGCCCACCAGTACTGGCGTTGTCAACTCCCTGATGATATCACTCCTGACTTCAAGGTCATGGGTGAAGATATTGAATCCCCAGGTCTTAACAACCTCTCTTTAGCAGGCTTATCAATAGAAGATGATAATGAATCCCCAAGCTTTCCATCCTCTAAGGGAAGTAGATATTTGTTGAATGAGCAGCAGGAATTATCTCAAAAGCACCTGAATGGCAATGCCTTTGCTGATACGTTAAGGTTTTCCAGTTCAACCTACAGGGAGGAACCATCTTCAGGCAGCTTTTTGAGCACATTAGCAAAGCCTTGGGATAGGCAAGTTGGAAATGCCAACCTGCATGTTAGCAGTGGTCAAGAGGAACTTGCTTATGATGACAACATTACACATGGATTGTTAAATGATGTTTTGGGTGAGAATGCTACTATGGTGGATGATACGGGTTTTAACCCATTGGAATTTTTAGCTTCTCTATTCCCTGGTTTTGCATCAGAAAGCCTTGCTGAAGTTTACTTTGCCAATGGATGCGATTTTCATCTGACCATTGAAATGCTCACTCAGTTAGAGATTCAAGTTGATGGTGGTTTCAGTCAGAACCCAAGTCCAAAGACTCTGTCTGCTCCCAATCTTACTGCAATGGACTTTCCAGCACTTTCTTCACCAAATGGCCAGGCTACTTCTGCAAGATATGTTGCAGATAATGTTCAACAAAGCAACAATCCTTACTTATCTTCTAACAAAGACCTCCTGATGTTCAAATCTAGCTCTTCTGTTCCATCTAGAGGTGCTGTTGACTTTGCTTCAGCTGTTAGAAAATTGGCTTCTCAGGATTCTGGTATATGGAAGTATGATAGAAATGGTTCTGGTGATGCTTCCACGGGCTCAAGTAGGAGTTTGAATGTTCTGGCTAGTGCCTATAATGGTGGACAGGGGAGAGCCAATATTGGTGATAGATTACAGAACCGTAGTTCTGCCCGGGCAGCTCCAGCCTGGGTTGAAACTGGTGAAGCAGTTGCTAATATGTATTCTGATCTGCGGGAGGAGGCACGTGATCATGCACGCCTGCGTAATGCATATTTTGAGCAGGCACGACAAGCCTACCTTATTGGCAATAAGGCCCTTGCAAAGGAGCTAAGTGCTAAAGGGCAACTGCACAACATGCATATGAAAGCAGCTCATGGAAAGGCTCAAGAATCTATTTACCGTCAGAGGAATCCTGTTACCTCGGGACACGAGAAAATGATAGACCTACATGGGCTGCATGTAAGTGAAGCCATTCACGTGCTGAAACACGAGTTGAGTGTACTAAGAAGCACGGCCAGAGCCGCTGAGCAGCGTTTGCAGGTTTACATCTGCGTTGGTACCGGTCACCACACCCGGGGTTCCCGCACTCTTGCGCGACTCCCGATTGCTGTACAGCGCTATCTACTCGAAGAAGAGGGCCTTGATTTCACTGAACCACAGCCAGGCCTGCTTCGTGTTGTGATATATTAA 1716 0.4499 MSLSNKGSQTDTKLGTPSRATALNPNAAEFVPFSLRTLSSGSTSSVDATRLTTAGTLGKAVLDRTESSISNNSDDEAHQYWRCQLPDDITPDFKVMGEDIESPGLNNLSLAGLSIEDDNESPSFPSSKGSRYLLNEQQELSQKHLNGNAFADTLRFSSSTYREEPSSGSFLSTLAKPWDRQVGNANLHVSSGQEELAYDDNITHGLLNDVLGENATMVDDTGFNPLEFLASLFPGFASESLAEVYFANGCDFHLTIEMLTQLEIQVDGGFSQNPSPKTLSAPNLTAMDFPALSSPNGQATSARYVADNVQQSNNPYLSSNKDLLMFKSSSSVPSRGAVDFASAVRKLASQDSGIWKYDRNGSGDASTGSSRSLNVLASAYNGGQGRANIGDRLQNRSSARAAPAWVETGEAVANMYSDLREEARDHARLRNAYFEQARQAYLIGNKALAKELSAKGQLHNMHMKAAHGKAQESIYRQRNPVTSGHEKMIDLHGLHVSEAIHVLKHELSVLRSTARAAEQRLQVYICVGTGHHTRGSRTLARLPIAVQRYLLEEEGLDFTEPQPGLLRVVIY* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2944 571 CDD CUE_CID7_like 224 265 IPR041806 -
Lja5g2944 571 Gene3D - 463 570 IPR036063 -
Lja5g2944 571 SMART DUF1771_2 415 480 IPR013899 -
Lja5g2944 571 Coils Coil 500 520 - -
Lja5g2944 571 SMART SMR_2 486 571 IPR002625 -
Lja5g2944 571 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 1 571 - -
Lja5g2944 571 MobiDBLite consensus disorder prediction 1 23 - -
Lja5g2944 571 ProSiteProfiles Smr domain profile. 489 571 IPR002625 -
Lja5g2944 571 SUPERFAMILY SMR domain-like 487 569 IPR036063 -
Lja5g2944 571 Pfam Domain of unknown function (DUF1771) 416 479 IPR013899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2944 Lja-Chr5 57932180 57938487 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2944 - - gmx:100796128 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2944 5 57932180 57938487 Lja5g2944 5 57932180 57938487 ECH