Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2898 ATGGAAGGACCCGAATCTCAAGAGACTCGGGGTTCTGTAGTTCACTCCGCCGTCACTCACTCCTTTCGTCCGCCGCTGATAGCCATCGCCGGAATGGTGGGTTTATCTCTTGGTGAGCGACATTTCATCCAAGGTGGCATTGCTCAGGATCTTCGCTGTGATGGTAGAAAGAGATTGACTTACCGGCCAATCTATGTTGAAACTGGAGTGATTCCTCAGGCACATGGTTCAGCTAGAATCAGAATGGGTGCTACAGAGGTCATTGCCAGTGTGAAGGCTGAACTTGGGAAGCCAAGCTTATTACAACCTGACAAAGGGAAAGTCTCTATATATATTGATTGTAGTTCGACTGCAGAGCCAGCTTTTGAGGGTAGAGGGGGTGATGACTTGTCAGCAGAACTGTCTGTAGCTCTTCAACGCAGTCTCTTGGGCGCTAAAAGTGGAGCAGGTGCTGGTATTGATCTCTCCTCGCTCATTGTTGTTGAAGGGAAAATTTGTTGGGATCTTTATATTGATGGACTTGTTGTTAGCTCAGATGGAAATTTGTTAGACGCACTAGGGGCTGCCATTAAGGCTGCTTTGAGCAATACAGGTATTCCAAGAGTCCAAGTTGCTGCTGGTGCGTCAGGTGATGAGAAACCAGAAGTTGAAATAAGTGATGATGAGTTTTTGCAGTTTGACACATCTGGAGTCCCTGTTATAGTTACACTGACTAAGGTTGGGAGGCACTCTATCGTGGATGCCACATCAGAAGAGGAATCACAAATGAGCTCTGCTGTTTCCATATCTGTTAATAGGCAAGGTCACATCTGTGGTATCACCAAACGAGGAAGTGTTGGGCTGGATCCAAGTATCGTTCTTGATATGATATCTGTGGCTAAGCATGTGAGCGAGCAGTTAATAAACAAACTGGATTCAGAAATAGCTTCTGCTGAAGCTGAAGATGACTCATGA 954 0.4602 MEGPESQETRGSVVHSAVTHSFRPPLIAIAGMVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRSLLGAKSGAGAGIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGDEKPEVEISDDEFLQFDTSGVPVIVTLTKVGRHSIVDATSEEESQMSSAVSISVNRQGHICGITKRGSVGLDPSIVLDMISVAKHVSEQLINKLDSEIASAEAEDDS* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2898 317 CDD RNase_PH_RRP42 35 309 - -
Lja5g2898 317 SUPERFAMILY Ribonuclease PH domain 2-like 227 314 IPR036345 -
Lja5g2898 317 Pfam 3' exoribonuclease family, domain 2 231 294 IPR015847 -
Lja5g2898 317 PANTHER BNAA05G29900D PROTEIN 30 314 - -
Lja5g2898 317 Pfam 3' exoribonuclease family, domain 1 61 200 IPR001247 -
Lja5g2898 317 PANTHER EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN 30 314 - -
Lja5g2898 317 Coils Coil 294 314 - -
Lja5g2898 317 Gene3D - 34 317 IPR027408 -
Lja5g2898 317 SUPERFAMILY Ribosomal protein S5 domain 2-like 35 254 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2898 Lja-Chr5 56911837 56918393 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2898 K12589 - gmx:100818134 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2898 5 56911837 56918393 Lja5g2898 5 56911837 56918393 ECH