Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2894 ATGATCCCAACAACAAACCCTTCTTCTTCTTCTTCTTCATACACAAACCCAGAACCATGTCAACATCTTGTTGATTACAAGCTCAAGCATGGCTTCAATGGCTACAAAGCTATCCAAAATCTCCTTGTGACATCTCCGATTGGGAGAACCAGTGTCAAGAAGCCTAATACAGCAATACCCAGATGCAGTTTCTGTAATGGGTGTCAAGGGAGATTCTATTTATGTCTGATTTGCTCTTCATTCTCTTGTTTTGATCATACCCTTTTGCACCCTCAATCTGAATCTGGTCATGCTGTGTTTGTGGACATTGAAAGAGCTGAACTTTATTGTGGGGTGTGCTGTGATCAATTGTATGATCCTGATTTTGATCAAGTTGTGATGTCTAAACATTCAATGGGTGGGAATGGGAGTGAGAGCATTGGGCAGAGATTGATCAAAAGGAGGAGATTGGTTTCTGGGGTTGGATTGGATTTGGGGAAATTGAAGTACAGGTTTCCAGCTGAAGATCTGAGGGCTAAATCTTGTTATCCAATGGGGTTGAGGGGGTTGAACAATCTGGGTAGTACTTGTTTCATGAATTCTGTGTTGCAAGCATTACTACATGCACCTCCTTTCAGGGACTATTTCTTGAGTGATGGTCATTGTTTGGATGCTTGTCAGAAGAGAACCATGGATCGGATGTGTTTGCTTTGTGATATAAATGCTGTTTTTTCAGCTGTGTATTCGGGTGATCGAAATCCATATAGCCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCAATGTTAGATGCAATCCATGAGAAAGAGGGCAAAACAAGGAACGGAAGCAGAGGTAACGGAGACTGTCAGTGCATTGCTCATAGAGTGTTTTATGGGCTATTGAGATCAGATGTTACCTGTATGGCCTGTGGATTCACCTCAACAACCTATGACCCTTGTTTGGACATTTCACTTAACTTAGATACCAATGTCTCTCTAACTGAAAACGGTAAAAAGCTTACCAAACGGGATGGGGAAGGAAGCATGTCTACTCTTTTGGGTTGTTTGGACTTGTTCACTAGGCCAGAGAAGTTGGGATCGGACCAGAAACTTTACTGCCAAAACTGTCAGCAAAGACAGAACTCATTGAAACAAATGTCAATTAGAAAGCTCCCTTTGGTACTTAGCTTGCATGTGAAACGGTTTGAGCACTCTTTTGTGAAGAAGACTTCAAGAAAAATAGATCGCTACCTGCATTTTCCATTCTCCTTGGACATGACACCATATATGTCCTCTTCAATCCTCAGGGCCAGATATGGAAATAGAATCTTTGCTTTCGGGGGTGATGAACCAGACATGTTTTCCGAGTTTGATATTTTTGCAGTGGTGACACATTCAGGGACTCTCGAGTCGGGCCATTATGTTACTTTTGTGCGTTTGAGGAAGCAGTGGTACAGATGTGATGATGCTTGTATAACAGAGGTTGATGAGGCGACAGTCAGAGCTTCACAATGTTACATGATCTTCTATGCGCAGAAAACCCTACAGGATAAAGCGAATGAAGATTTGAGTCTCCTGCCGAATTCCCCTGGAAGAGAGTTACTTCTTCCTATTGCTGGGTGTTGCTAG 1662 0.426 MIPTTNPSSSSSSYTNPEPCQHLVDYKLKHGFNGYKAIQNLLVTSPIGRTSVKKPNTAIPRCSFCNGCQGRFYLCLICSSFSCFDHTLLHPQSESGHAVFVDIERAELYCGVCCDQLYDPDFDQVVMSKHSMGGNGSESIGQRLIKRRRLVSGVGLDLGKLKYRFPAEDLRAKSCYPMGLRGLNNLGSTCFMNSVLQALLHAPPFRDYFLSDGHCLDACQKRTMDRMCLLCDINAVFSAVYSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKTRNGSRGNGDCQCIAHRVFYGLLRSDVTCMACGFTSTTYDPCLDISLNLDTNVSLTENGKKLTKRDGEGSMSTLLGCLDLFTRPEKLGSDQKLYCQNCQQRQNSLKQMSIRKLPLVLSLHVKRFEHSFVKKTSRKIDRYLHFPFSLDMTPYMSSSILRARYGNRIFAFGGDEPDMFSEFDIFAVVTHSGTLESGHYVTFVRLRKQWYRCDDACITEVDEATVRASQCYMIFYAQKTLQDKANEDLSLLPNSPGRELLLPIAGCC* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2894 553 Pfam Zn-finger in ubiquitin-hydrolases and other protein 62 121 IPR001607 GO:0008270
Lja5g2894 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 134 IPR013083 -
Lja5g2894 553 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 181 524 IPR028889 -
Lja5g2894 553 ProSiteProfiles Zinc finger UBP-type profile. 42 136 IPR001607 GO:0008270
Lja5g2894 553 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 182 197 IPR018200 GO:0004843|GO:0006511
Lja5g2894 553 SUPERFAMILY Cysteine proteinases 177 522 IPR038765 -
Lja5g2894 553 SUPERFAMILY RING/U-box 19 124 - -
Lja5g2894 553 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 11 549 - -
Lja5g2894 553 Gene3D Cysteine proteinases 175 531 - -
Lja5g2894 553 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 11 549 - -
Lja5g2894 553 Pfam Ubiquitin carboxyl-terminal hydrolase 182 521 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2894 Lja-Chr5 56865883 56869775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2894 182 523 Miscellaneous Gene Families AT2G24640 29.830 5.80e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2894 K11366 - gmx:100806347 972.23