Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2884 ATGATCATCAAGCTCTTGGTTGCATTAATTCACTACCTCCATGAAACCATGGCCGTCCAAAGCATCATACCCCTTTTGGTTATTCTCATGAGCCTTCACTCTTATGCATTCACTAAACCTTCTTTACATAGGCAGCAGCCACCGCCCAAGGATGGTGTTAGAGCGGCATATTGGCCTGCAGGGTCTGATTTCTCAACCTCTTCCATTGACACAAACTACTTCACTCACATATACTACGCCTTTGTCCAACCTGCACCGGAATCCTTCAACCTCCAAATCAGTGAATCCGACAAGAAGTGGGCCCCCAAGTATGATGGAATCCGTAACATCCGTCCGCGGGTGACAACGCTGCTATCCATCGGAGGGGGTGGCAACAACGCAACCCTCTTCTCAGAGATGGCTAGCAGCAAACGAAACCGCGCGAGCTTCATAAACTCCACCATCCACGTGGCGCGAAAGTACGAGTTCAATGGTCTTGACTTGGATTGGGAGTGGCCGAGAGATGAAAAAGACATGTCTAACCTTGCGTTGTATAGAAAATCACGTTTGCTTTTAACTTCTGCGGTGTATTTTAACTCCATGATTTCGCTTATTGGTAATGGGCCTAGGTTGTACCCGGTTCGAGCCATTCGGAAGTACTTGGATTGGGCTAACCCAATGTGTTTTGATTTCCATGGCGCGTGGGCCAACGAAACGGGCTTTAACGCCGCGTTGTATGATCCAAATTCTAACATAAGCACCAAGTATGGTATCGGGTCTTGGATCAGGTCAGGTGTGCCGGCCGAGAAACTGGTTATGGGTTTGCCGCTATACGGGCGGGCGTGGGAGCTGAAGGATCCGAATGATCATGGGGTTGGGGCAAAAGCGGTTGGTCCAGCAGTTGATACAGATGGTAGTATGGACTATGATGAAATCTTGGTGTTTAATAAAGACACTGGTGCCAAGGTTGTGTATGATGAAGTGGCTGTGTCATTCTACTCTTATTCGGGCACTACTTGGATCGGGTATGATGATGGACCCTCCATAACGAAGAAGGTTCAATTTGCTCGGTCAATGGGCTTGAATGGGTATTTCTTTTGGGCTATTGGCAAGGACAAGGATTGGACCATCTCAAAACAAGTGGCGGAGGAGGGGACATGCCCCTCCTTCTTACATGTGATACATATCTATATGAGCAGTACTTTGATTTTGGTCACCTTAGTTTAG 1206 0.4776 MIIKLLVALIHYLHETMAVQSIIPLLVILMSLHSYAFTKPSLHRQQPPPKDGVRAAYWPAGSDFSTSSIDTNYFTHIYYAFVQPAPESFNLQISESDKKWAPKYDGIRNIRPRVTTLLSIGGGGNNATLFSEMASSKRNRASFINSTIHVARKYEFNGLDLDWEWPRDEKDMSNLALYRKSRLLLTSAVYFNSMISLIGNGPRLYPVRAIRKYLDWANPMCFDFHGAWANETGFNAALYDPNSNISTKYGIGSWIRSGVPAEKLVMGLPLYGRAWELKDPNDHGVGAKAVGPAVDTDGSMDYDEILVFNKDTGAKVVYDEVAVSFYSYSGTTWIGYDDGPSITKKVQFARSMGLNGYFFWAIGKDKDWTISKQVAEEGTCPSFLHVIHIYMSSTLILVTLV* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2884 401 CDD GH18_plant_chitinase_class_V 51 371 - -
Lja5g2884 401 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 156 164 IPR001579 GO:0004553|GO:0005975
Lja5g2884 401 PANTHER CLASS V CHITINASE CHIT5A 42 375 - -
Lja5g2884 401 PANTHER CHITINASE 42 375 - -
Lja5g2884 401 SMART 2g34 52 365 IPR011583 GO:0008061
Lja5g2884 401 Pfam Glycosyl hydrolases family 18 56 365 IPR001223 GO:0005975
Lja5g2884 401 Gene3D - 270 336 IPR029070 -
Lja5g2884 401 SUPERFAMILY Chitinase insertion domain 271 336 IPR029070 -
Lja5g2884 401 Gene3D Glycosidases 67 366 - -
Lja5g2884 401 SUPERFAMILY (Trans)glycosidases 51 380 IPR017853 -
Lja5g2884 401 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 52 381 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2884 Lja-Chr5 56733133 56735522 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2884 53 376 Glycoside Hydrolase AT4G19810 40.643 1.20e-80 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2884 K01183 - gmx:100787511 507.294