Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2878 ATGGCGGCGTCTTCAGTGTTCTCTGTAGCTTCACACTCTGTTTCGCCTTCGAATCACCATGCTCACAAGGGAAAAACCAAGATTGGAGGTAGCGGTTTGAGATTGGCAAATTCAAGGTCTTCTGGTAGTGGCCGGATCTCTATGGCTGTTGCTGTTAATGCTTCTCGATTTGAGGGAATACCGATGGCTCCACCTGATCCAATTCTCGGAGTTTCTGAAGCATTTAAAGCGGACAAATGCGATCTCAAGCTCAATCTTGGAGTTGGGGCCTACAGAACTGAAGAATTACAGCCATATGTGCTTAATGTTGTTAAGAAGGCAGAGAATCTTATGCTGAATAGAGGGGAAAACAAAGAGTATCTACCTATTGAGGGTTGGGCTGCATTTAATAAGGCAACTGCAGAGTTGTTACTCGGAGCTGACAACCCAGCAATCAAAGAACAAAGAGTTGCCACTGTCCAAGGTCTTTCTGGAACTGGTTCTCTGCGACTAGCTGCTGCTCTGATAGAGCGATATTTTCCAGGGGCAAAAGTTTTGATATCATCCCCTACCTGGGGTAATCACAAGAATATTTTCAATGATGCTAGAGTCCCATGGTCAGAGTACCGATATTATGATCCTAAGACGGTTGGATTGGATTTTGAGGGCATGTTAGAAGATATAAAGTCAGCTCCTGAAGGATCTTTCGTGCTACTTCATGGATGTGCTCATAACCCTACCGGTATTGATCCCACACCAGAACAGTGGGTGAAAATAGCTGATCTAATTCAACAAAAGAACCACATTCCATTTTTTGATGTCGCTTACCAGGGGTTTGCTAGTGGAAGCCTGGATGAAGATGCTGCTTCTGTGCGATTGTTTGTGTCACGTGGCATGGAGGTTCTAGTAGCTCAGTCATACAGTAAAAATCTTGGTCTCTATGCTGAAAGGATTGGAGCAATCAATGTCATTTCCTCATCACCAGAATCTGCTGCAAGGGTAAAGAGCCAATTGAAAAGGATTGCCAGGCCAATGTACTCTAATCCACCGGTTCACGGGGCTAGGATTGTTGCTGATATAGTTGGAAATCCAGATCTCTTCAATGAATGGAAAGCAGAGATGGAAATGATGGCAGGAAGGATAAAGAATGTTAGACAGAAGCTATATGATAGTATTTCTTCAAAAGACAAGAGTGGAAAGGATTGGTCATTCATACTTGAGCAGATAGGCATGTTCTCATTCACAGGCTTGAACAAGAATCAGAGTGACAATATGACAAATAAGTGGCATGTATACATGACAAAAGATGGAAGGATTTCCCTGGCAGGATTGTCACTGGCCAAATGTGAATACCTTGCAGATGCTATTATTGACTCTTATCATAATGTCAGCTGA 1374 0.4316 MAASSVFSVASHSVSPSNHHAHKGKTKIGGSGLRLANSRSSGSGRISMAVAVNASRFEGIPMAPPDPILGVSEAFKADKCDLKLNLGVGAYRTEELQPYVLNVVKKAENLMLNRGENKEYLPIEGWAAFNKATAELLLGADNPAIKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMLEDIKSAPEGSFVLLHGCAHNPTGIDPTPEQWVKIADLIQQKNHIPFFDVAYQGFASGSLDEDAASVRLFVSRGMEVLVAQSYSKNLGLYAERIGAINVISSSPESAARVKSQLKRIARPMYSNPPVHGARIVADIVGNPDLFNEWKAEMEMMAGRIKNVRQKLYDSISSKDKSGKDWSFILEQIGMFSFTGLNKNQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2878 457 Gene3D Aspartate Aminotransferase, domain 1 60 449 IPR015422 GO:0003824
Lja5g2878 457 SUPERFAMILY PLP-dependent transferases 55 451 IPR015424 -
Lja5g2878 457 PANTHER ASPARTATE AMINOTRANSFERASE 3 455 IPR000796 GO:0006520|GO:0008483
Lja5g2878 457 Pfam Aminotransferase class I and II 83 449 IPR004839 GO:0009058|GO:0030170
Lja5g2878 457 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 299 312 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lja5g2878 457 PRINTS Aspartate aminotransferase signature 230 249 IPR000796 GO:0006520|GO:0008483
Lja5g2878 457 PRINTS Aspartate aminotransferase signature 261 273 IPR000796 GO:0006520|GO:0008483
Lja5g2878 457 PRINTS Aspartate aminotransferase signature 398 416 IPR000796 GO:0006520|GO:0008483
Lja5g2878 457 PRINTS Aspartate aminotransferase signature 329 354 IPR000796 GO:0006520|GO:0008483
Lja5g2878 457 PANTHER ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC 3 455 - -
Lja5g2878 457 Gene3D - 115 356 IPR015421 GO:0003824
Lja5g2878 457 CDD AAT_like 84 449 - -
Lja5g2878 457 MobiDBLite consensus disorder prediction 13 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2878 Lja-Chr5 56597358 56603282 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2878 K00811 - gmx:547792 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2878 5 56597358 56603282 Lja5g2878 5 56597358 56603282 ECH