Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2862 ATGCCTTCCTTTTCCACTCTTAGTAGAAGATCCTCACACTTCACCCAACATTTTCCACTCCAACGCTTCTCGATCCGCCACTCTTCAACCTCCTCCTCCTCTTCTTCTTCCGCCGCTCCGACCACCACCGCGTTCGGTCGGAAGCTGGTTTCGGTAATTATAGCAGGCACGAGTCTAGGGCTTCTTCTGTACTCCGAGTTTGACTCTGCTTCCGTCAAACCCTCACTGTCTTCTTTCGTTGACTGGTCAGCACTGACTTCTGATGGCCAAAACCGACGTCGTTCTTCTTCCGCCGCGTTCTTCAGAAAATTCTCCCTTCCCGAAAGCACCGGTACCTTGCTCTTCGGAGATGCGTATAGGAGAAAAATATTTTTCAACTATGAGAAGCGAATACGGTTGCGAAGTCCTCCAGAAAAGGTTTTTGAATACTTTGCATCGTGTCGTACTTCAGATGGAGAACTACTCATGATACCAGCAGACCTAATGCGGGCAGTGATTCCTGTTTTCCCTCCATCTGAATCCCACCATGTTAGAGATGGAAACTTGAGAGGAGAAAGAAGTCCCGGTCATCTACGCTGTCCACGTTCAGAATTTTTTATGCTTTTTGATGTAAACGGTGATGAGCTTATATCTTTCAAAGAGTATATCTTTTTTGTGACATTACTCAGTATCCCTGAATCAAGCTTTTCTGTGGCATTTAAAATGTTTGATGTGGACAATAATGGGGAGATAAGTAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCATCATCGGCAAGGTGTTGAACATAGGGATGGACTGAGAACTGGCCTGAAGGTGAATGATTCTGTGGAAAATGGAGGACTGTTGGAATATTTTTTCGGTAAAGATGGAAAGGGATGCCTCCAGCATGACAAGTTTGTTCAATTTTTGAGAGACTTGCATGATGAAATTCTGAGGTTGGAGTTTGCTCATTATGACTACAAAGCTCGCAAAACCATATCAGCCAAGGACTTTGCACTTTCCATGGTTGCTTCTGCGGACATGAGTCATATAGGCAAGTTGCTTGAACGGGTTGATGAGTTGGGCAATGATCCACTCTTTAAGGATGTACGCATCACATTTGAGGACTTCAAAAGCTTTGCAGAGCTACGAAAGAAGTTATTTCCACTGTCATTGGCCCTTTTCAGTTTTGGAAAATTAAATGGCCTGTTAACGAGAGATGATTTTCAAAGAGCAGCATCACATGTTTGTGGCATATCTCTCTCAGACGATGTGGTTGAGATTGTTTTCCATTTGTTTGACACAAACTGGGATGGGAACCTAAGTTCTGATGAGTTTGTGAGAGTGCTACACAAGCGAGAAAGGGACATTGTACAACCTGTGGAGACAGGAATCCCAGGTTTCTTGTCCTGCTGCTGGAACTGCACGGATAACATCTCATCTTTGCGGTTTCCCTGA 1449 0.4431 MPSFSTLSRRSSHFTQHFPLQRFSIRHSSTSSSSSSSAAPTTTAFGRKLVSVIIAGTSLGLLLYSEFDSASVKPSLSSFVDWSALTSDGQNRRRSSSAAFFRKFSLPESTGTLLFGDAYRRKIFFNYEKRIRLRSPPEKVFEYFASCRTSDGELLMIPADLMRAVIPVFPPSESHHVRDGNLRGERSPGHLRCPRSEFFMLFDVNGDELISFKEYIFFVTLLSIPESSFSVAFKMFDVDNNGEISKEEFKKVMALMRSHHRQGVEHRDGLRTGLKVNDSVENGGLLEYFFGKDGKGCLQHDKFVQFLRDLHDEILRLEFAHYDYKARKTISAKDFALSMVASADMSHIGKLLERVDELGNDPLFKDVRITFEDFKSFAELRKKLFPLSLALFSFGKLNGLLTRDDFQRAASHVCGISLSDDVVEIVFHLFDTNWDGNLSSDEFVRVLHKRERDIVQPVETGIPGFLSCCWNCTDNISSLRFP* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2862 482 Gene3D - 137 282 - -
Lja5g2862 482 CDD EFh 197 254 IPR002048 GO:0005509
Lja5g2862 482 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 479 IPR039800 GO:0005509|GO:0006851
Lja5g2862 482 SMART efh_1 228 256 IPR002048 GO:0005509
Lja5g2862 482 SMART efh_1 422 450 IPR002048 GO:0005509
Lja5g2862 482 SMART efh_1 197 222 IPR002048 GO:0005509
Lja5g2862 482 SUPERFAMILY EF-hand 197 448 IPR011992 -
Lja5g2862 482 Pfam EF hand 232 255 IPR002048 GO:0005509
Lja5g2862 482 ProSitePatterns EF-hand calcium-binding domain. 237 249 IPR018247 -
Lja5g2862 482 SUPERFAMILY EF-hand 285 449 IPR011992 -
Lja5g2862 482 CDD EFh_MICU 229 450 - -
Lja5g2862 482 Gene3D - 314 459 - -
Lja5g2862 482 ProSiteProfiles EF-hand calcium-binding domain profile. 224 259 IPR002048 GO:0005509
Lja5g2862 482 Pfam EF-hand domain pair 399 448 IPR002048 GO:0005509
Lja5g2862 482 ProSiteProfiles EF-hand calcium-binding domain profile. 418 453 IPR002048 GO:0005509
Lja5g2862 482 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 1 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2862 Lja-Chr5 56317588 56322555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2862 48 415 EF-hand Containing Proteins AT4G32060 65.147 1.90e-164 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2862 K22827 - gmx:100806575 694.501