Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2837 ATGATCATCAAAACCAAGTTCCCATTCTCACCTTCTTCCACTCCTTCCACACTCACCAATCTCACCCTCCAACTTCCCCCAACCACCACAAGATCAAGAGTTGCAGAACAAACCTGCTTAACTCTCCTCAACTCCTGCACCACCCTCACCACTCTCACCCAAATCCACACCCTCATCCTCAAACTCGGCCTCATCAACAACCCACTCGTTCTCACCAAATTCGCCGCCACCTCCTCCACCTTCAACGCCATTCACTACGCCACCTCCTTCCTCTTCTCCGATGACCCAACCACCGCGCCTCGCGCTTCCTCCTTCGATGCCTTCCTCTTCAACACGCTCATCAGGGCCTTCGCTCATACCCCTCAGTCGAAGTCCAGTGGGTTGCAGTTGTACCGGACAATGCTACGTTACGGCGTCGTGCCCAACAAGTTTACTTACCCGTTTGTGCTCAAGGCCTGCGCTGGACTCAGTGATTTGCGGCTCGGGAAGGCGGTTCATGGGTCTGTTGTGAAGTTCGGGTTTGATGACGATCTTCATGTACAGAACACCATGATTCACATGTATTGTTGCTGTTGTTGTGGTTCTGGTGAAGGTAAAGAAGAGGGAGAAGGGGTTGAGCTTGCAGGCAAGGTGTTTGATGAAAGTCCTAAGACGGATTCGGTGACGTGGAGTGCTATGATTGGTGGGTACGCGCGTCGCGGACATTCTTCGCGGGCCGTTGGGTTGTTTCGTGAGATGCAAGTTATGGGTGTTTGCCCTGATGAGATTACCATGGTTTCTGTTTTGACTGCATGTGCTGATTTGGGTGCACTTGAACTGGGGAAGTGGTTGGAATCTTATATTGAGTGGAAAAAGATACCAAAGTCCGTGGAGCTCTGTAACGCGTTGATAGACATGTTTGCCAAGTGTGGTGATGTTGATAAAGCTATGAATCTGTTTCGACAAATGGACTCGTGCACCATAGTTTCATGGACTTCAGTAATTGTTGGTCTTGCAATGCACGGTCGTGGGTCAGAGGCTGTTTCCTTATTTGATGAGATGGTTGAACAAGGAGTGGAACCTGATGATGTTTCTTTCATTGGGGTGCTCTCTGCATGTTGTCACTCCAAGCTAGTTGATAAAGGACGTAGTTATTTCAATTCAATGGAAGGGAATTTCGGCATTGTGCCAAAGATAGAACACTATGGATGCATGGTGGATTTGTTGAGTAGAGCTGGATTTGTCAAAGAGGCATTAGATTTTGTCCGAACTATGCCTGTTGAGCCAAACCAAATCATCTGGAGAAGCATAATCACTGCATGTCATGCACGCGGGGAACTCAAGTTAGGGGAGAGCATCTCGAAAGAGCTACTGAGAAACGAGCCAACGCATGAATCGAACTATGTTCTGCTCTCAAACATTTATGCGAAATTGCGACGGTGGGAGCAAAAGACCAAGGTGAGGGAGATGATGGATATGAGAGGGATGAAGAAGGTTCCAGGGAGCACCATGATTGAGCTGAACAACGAAATGTGCGAGTTTGTCGCTGGAGATAAGTCACATGATCAATACAAGCAAATATATGAAATGGTGGATGAGATGGGAAGGGAAATTAAGAGGGCAGGGTATGTTCCTACAACATCTCAGGTTTTACTTGACATTGATGAAGAAGATAAAGAAGATGCTTTGTATAAGCACAGTGAAAAGCTTGCAATAGCTTTTGCTCTTCTGAACACGCCCCCTGGAACACCAATCAGAATTGTGAAAAACTTGCGCGTTTGTGAAGATTGTCATTCTGCTACTAAGTTCATATCTAAGGTTTATAACCGAGAGATTGTGGTCAGGGACCGCAATCGCTTCCACCATTTCAAGAATGGTTTGTGTTCATGCGGAGACTTCTGGTAA 1884 0.4708 MIIKTKFPFSPSSTPSTLTNLTLQLPPTTTRSRVAEQTCLTLLNSCTTLTTLTQIHTLILKLGLINNPLVLTKFAATSSTFNAIHYATSFLFSDDPTTAPRASSFDAFLFNTLIRAFAHTPQSKSSGLQLYRTMLRYGVVPNKFTYPFVLKACAGLSDLRLGKAVHGSVVKFGFDDDLHVQNTMIHMYCCCCCGSGEGKEEGEGVELAGKVFDESPKTDSVTWSAMIGGYARRGHSSRAVGLFREMQVMGVCPDEITMVSVLTACADLGALELGKWLESYIEWKKIPKSVELCNALIDMFAKCGDVDKAMNLFRQMDSCTIVSWTSVIVGLAMHGRGSEAVSLFDEMVEQGVEPDDVSFIGVLSACCHSKLVDKGRSYFNSMEGNFGIVPKIEHYGCMVDLLSRAGFVKEALDFVRTMPVEPNQIIWRSIITACHARGELKLGESISKELLRNEPTHESNYVLLSNIYAKLRRWEQKTKVREMMDMRGMKKVPGSTMIELNNEMCEFVAGDKSHDQYKQIYEMVDEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYKHSEKLAIAFALLNTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2837 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Lja5g2837 627 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 613 - -
Lja5g2837 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Lja5g2837 627 Pfam DYW family of nucleic acid deaminases 535 627 IPR032867 GO:0008270
Lja5g2837 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 141 IPR002885 -
Lja5g2837 627 PANTHER - 37 613 - -
Lja5g2837 627 Pfam E motif 439 499 IPR046848 -
Lja5g2837 627 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Lja5g2837 627 TIGRFAM PPR: pentatricopeptide repeat domain 221 255 IPR002885 -
Lja5g2837 627 TIGRFAM PPR: pentatricopeptide repeat domain 358 390 IPR002885 -
Lja5g2837 627 TIGRFAM PPR: pentatricopeptide repeat domain 292 318 IPR002885 -
Lja5g2837 627 Pfam PPR repeat 293 318 IPR002885 -
Lja5g2837 627 Pfam PPR repeat 394 418 IPR002885 -
Lja5g2837 627 Pfam PPR repeat family 321 368 IPR002885 -
Lja5g2837 627 Pfam PPR repeat family 219 266 IPR002885 -
Lja5g2837 627 Gene3D Tetratricopeptide repeat domain 100 166 IPR011990 GO:0005515
Lja5g2837 627 Gene3D Tetratricopeptide repeat domain 168 279 IPR011990 GO:0005515
Lja5g2837 627 Gene3D Tetratricopeptide repeat domain 280 510 IPR011990 GO:0005515
Lja5g2837 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 319 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2837 Lja-Chr5 55878959 55883240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2837 38 627 Glycoside Hydrolase AT3G49170 35.058 3.47e-126 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2837 - - lang:109350726 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2837 5 55878959 55883240 Lja5g2837 5 55878959 55883240 ECH