Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2829 ATGCGACGCGCTCCTCCCTCTACCCATTTCCTCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACAATGTCTTCACGCCCGCACCACCGTGGACGCGGCAGAGGATTCTCCGGCCGCCCCTACTCCGCCGCCAGAGACCAGTTCGTTACCGGCGACTCTCACTTCCGGTCCGTACGCGACGCCAATTCCGGAATCCGCCGTGGAGGCTTCGCGAATCAAACGCAGTATAATCAGAATCCGCCGCGGCCTTATCCTCCTCCTCCGACGCAGTTCCGGCCGCCGAATCACCGGCAAGCGTTTCGTCCGAAGCCTCCGGATTATCGAGAGTGGGAGCTCGCTCTTACGCCGCCACCTCCTCCGCATTGTGAACGGTTTATAGTCCTTTCGTATAATATATTGGCTGACTACCTGGCTATGGAGCATGGGAGACTTTATTCACACATACCTCGTTACATGTTGGACTGGCAGTGGAGAAAGAATAATATAGTTTTTGAGCTTGGGTTGTGGTCTGCTGATATCATGTGTTTACAGGAGGTTGATAGATTTCATGAGTTGGCAGAGGATTTTAAGGCTAAGGGATACAGTGGCATCTGGAAGATGCGTACCGGCAATCCAGTAGATGGCTGTGCTATCTTTTGGCGAACATCAAGGTTCAATTTGTTATATGAAGAATGCATTGAGTTCAATAAGCTGGGACTTAGAGACAATGTCGCTCAAATATGTGTACTAGAGCTCATTAATCAAAATGGATCTCTCCCACCCAGCTTGAAAGGTTCTAGTAAAGTTGTGGTTTGTAACATTCATGTGCTGTACAATCCTAATAGAGGAGAGATTAAGCTTGGCCAGGTCAGAGTGCTACTGGATAAAGCCAAAGCTGTTTCTGAACTCTGGAATAATGCCCCTATTGTTATCTGTGGAGATTTTAATTGTACCCCTAAGAGTCCGTTGTACAACTTCATCTCAGAACAGAAGTTAGATCTGTCTGGAATAGATAGGGATAAGGTGTCGGGCCAAGCTTCTGCTACAATTCGCCCACCAAGGCGTGTCGGTACTAATAATAGTGAAAGGCCTGCTGATGGTTCAGTTCAGGTCCCATCCACTGAAGGTGACAAGGAAGTTAAGATTGGACAAGATAGTTCTGTGTCAGGCATGCAGAATCCAGAGACAAAGAATAATAGTTCAGAAAACCAACATACTCACACGGTTTTGGACGTGTCCAAGTCTTCGACAGATATGCAGTGTGCAAAGGAGACCGATCAATATGTCGATAAGGATACTCAGGATATAGCTGTTGACCATAAGATTTTTAATGGAGTTGATCATGGAAAAGAAGAGTCAAATACTTATCATAGTGAAAGTAGGCTCCTTATTCATCATATAGATGGTGAGATTCATAATACCACTCCTATGACCTCTTCAGCTCTTGAAACAGTTCACACTGATGCAGCTGGGTTGGGCAGTACACGACATAAACATATATCAGATGCTATCTCATCGTCAAATCAAGAATCTTTAAGTGAAAATTCCAACTTACATGACCCTAAAGGAAATGAACATACACAGGAAGAGCAATCTTCCCGGGTAAATATAGATCTTGAGTCAACAGATGTTGTCAACTTAAAAATTTCTTCAACTCAACCGTCCAGCCAGATTTCAGTTTCCGATGCTTTTGTAGTACCTAATCCAGGGTATAGTGAAAGCCCTTCTTGTGAGGTCGTTGCCGATGACCAAATGGATAGTTCATCGATCTCATGTCTAGTTTACAAATCACATCAATCAACCAACATTGACTTTCCACTAGATGAAAAACTAGGGGAAACATTCCTTGATGAGATAGATAAAACCATCATAGGCAGTGAAAATGTTAGTGAAGATGACAATGTTCTAAAAACTGAATTTCATAATGCCAAAGAAGGTGTTGCTCTCGATCTTGGCCCATCAGTGAAATCAGATTTTGTAAAGTCCTATCAGGTTGAGGAATTAGATTCTGCTTCCGAAGACTTATTGCTGCCTGCAGAAAGCAATGAAGTGGAGGATGAATTGTCTCCAGTTCCAATTTCCAAATCTATAGATCCAGGGAAAACTACTCATAATCCTTCCTTATGGACCCCTATGGAGATAAAAACTGCAGCAGGAAATGCAGAGTGCACCGTCTTGGAGCACCCTTTACTGCTTAGGAGCACATACACTGAAGCTACTATGAATTGTTCAGGAACTAGAGACCCCCATGGAGAGCCTCTGGTAACCAGTTATCATAGGTGCTTCTCAGGCACTGTTGACTACATATGGCGATCTGAAGGTCTGCAAACCACCAGAGTTCTTGCTCCAATACCTAAACATGTCATGGAATGGACTCCAGGGTTCCCTACAAAGAAATGGGGTAGTGATCATATTGCCTTGGTATCCGAGTTGGCTTTCTTGAAAGAGGGTAGCGACATCAGCAAGGATGTTTAG 2457 0.4493 MRRAPPSTHFLATATATATATATMSSRPHHRGRGRGFSGRPYSAARDQFVTGDSHFRSVRDANSGIRRGGFANQTQYNQNPPRPYPPPPTQFRPPNHRQAFRPKPPDYREWELALTPPPPPHCERFIVLSYNILADYLAMEHGRLYSHIPRYMLDWQWRKNNIVFELGLWSADIMCLQEVDRFHELAEDFKAKGYSGIWKMRTGNPVDGCAIFWRTSRFNLLYEECIEFNKLGLRDNVAQICVLELINQNGSLPPSLKGSSKVVVCNIHVLYNPNRGEIKLGQVRVLLDKAKAVSELWNNAPIVICGDFNCTPKSPLYNFISEQKLDLSGIDRDKVSGQASATIRPPRRVGTNNSERPADGSVQVPSTEGDKEVKIGQDSSVSGMQNPETKNNSSENQHTHTVLDVSKSSTDMQCAKETDQYVDKDTQDIAVDHKIFNGVDHGKEESNTYHSESRLLIHHIDGEIHNTTPMTSSALETVHTDAAGLGSTRHKHISDAISSSNQESLSENSNLHDPKGNEHTQEEQSSRVNIDLESTDVVNLKISSTQPSSQISVSDAFVVPNPGYSESPSCEVVADDQMDSSSISCLVYKSHQSTNIDFPLDEKLGETFLDEIDKTIIGSENVSEDDNVLKTEFHNAKEGVALDLGPSVKSDFVKSYQVEELDSASEDLLLPAESNEVEDELSPVPISKSIDPGKTTHNPSLWTPMEIKTAAGNAECTVLEHPLLLRSTYTEATMNCSGTRDPHGEPLVTSYHRCFSGTVDYIWRSEGLQTTRVLAPIPKHVMEWTPGFPTKKWGSDHIALVSELAFLKEGSDISKDV* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2829 818 MobiDBLite consensus disorder prediction 487 533 - -
Lja5g2829 818 Gene3D Endonuclease/exonuclease/phosphatase 97 422 IPR036691 -
Lja5g2829 818 Gene3D Endonuclease/exonuclease/phosphatase 662 816 IPR036691 -
Lja5g2829 818 MobiDBLite consensus disorder prediction 337 400 - -
Lja5g2829 818 SUPERFAMILY DNase I-like 117 327 IPR036691 -
Lja5g2829 818 MobiDBLite consensus disorder prediction 346 362 - -
Lja5g2829 818 Pfam Endonuclease/Exonuclease/phosphatase family 129 329 IPR005135 GO:0003824
Lja5g2829 818 MobiDBLite consensus disorder prediction 675 702 - -
Lja5g2829 818 MobiDBLite consensus disorder prediction 493 512 - -
Lja5g2829 818 MobiDBLite consensus disorder prediction 513 527 - -
Lja5g2829 818 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 35 809 - -
Lja5g2829 818 MobiDBLite consensus disorder prediction 62 91 - -
Lja5g2829 818 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 35 809 - -
Lja5g2829 818 MobiDBLite consensus disorder prediction 17 43 - -
Lja5g2829 818 MobiDBLite consensus disorder prediction 379 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2829 Lja-Chr5 55765393 55777694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2829 156 324 EF-hand Containing Proteins AT5G54130 26.667 6.68e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2829 - - gmx:100810446 984.941