Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2774 ATGTCATCAAAACCAGACATGTATGAACCAAGAAATATCCTTATTACTGGAGCAGCTGGTTTCATAGCCTCCCATGTCACTACAAGGCTAATAAACAACTACCCTACCTACAAGATTGTAGCTCTTGATAAGCTAGACTATTGCTCCACTTTCAAGAATCTTCAATCATGCAATTCATCACCAAAGTTCAAATTCATCAAGGGTGACATAGCAAGCGTTGACATTGTGAATCATATCTTGATAGAAGAGGAAATAGACACCATTATGCATTTCGCTGCTCAAACCCATGTGGACAATTCCTTTGGGAACTCTATGGAATTCACATATAATAACATATATGGAACACATGTGCTTCTTGAGGCCTGCAGGGTCACGAATTGCGTTAAAAGGTTTATTCATGTTAGCACTGATGAAGTTTATGGTGAAACTAACTTGGAGACTGATATTGGAAATCATGAGGCATCTCAGCTTTTACCAACCAATCCTTACTCTGCAACAAAAGCTGGTGCAGAAATGTTGGTGATGGCTTATCACAGGTCTTATGGCCTTCCAATTATAACTTCTCGCGGCAACAATGTGTACGGTCCGAACCAGTACCCAGAAAAGCTTGTTCCTAAATTCATTCTTCTCGCCATGAAAGGCCAGAAATTGCCGATCCACGGGAACGGATCCAATGTGAGGAGTTATCTTTATAGTGGAGATGTGGCGGAAGCATTTGATGTGATACTTCACAAAGGAGTGATTGGCCAAATATACAACATTGGCACTAAGAAAGAAAGGAGCGTCTTAGATGTAGCAGAGGACATTTGCAAGCTCTTCGGATCGAACTCGAAAGAAGTTATTGAGTTTGTTCAAGACAGGCCTTTCAATGACAAGAGATATTTTCTGGATGATCAAAAACTGAAGAAGCTTGGTTGGGAGGAGAGAACTCCTTGGGAGGAAGGACTTAAGATGACAATTGATTGGTACAAAAAGAACCCTGATTGGTGGGGCGATGTATCCACTGCTTTAAACCCTCATCCGCGTTTTTCAGCAATCAATCTCTCCGATGATGCTCAATGGACCTTTCAATATGGATACTCAAGATTATTGAGATCATTCACCGAAGTTGGACGCGCTAATTCTGGGTTAAAATTCCTCATATATGGAAGGACTGGTTGGATAGGAGGGTTGCTGGGAAAGCTTTGTGATGAAGAGAGAATTTCTTGGGAGTATGGGAGAGGAAGGTTGGAAGATAGGAAATCACTTATGGAGGACATAAAGAGAGTGATGCCAACCCATGTGTTAAGTGCAGCTGGTGTTACTGGAAGGCCAAATGTTGATTGGTGTGAATCACATAAAGTTGAAACAATAAGGACTAATGTGGTGGGAACTCTAACACTTGCTGATGTATGCAAGGAACATGGCTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGATAAAGAACATCCTCTTGGGTCAGGCATTGGGTTTAAGGAGGAGGACAAGCCAAATTTCTCCGGTTCATTTTATTCAAAGACCAAGGCCATGGTGGAAGACCTTCTCAAAGATTATGATAATGTCTGCACATTGAGAGTTAGAATGCCAATATCATCAGATCTTAGCAATCCAAGAAACTTCATAACAAAGATTTCTCGTTATAGCAAGGTGGTAAACATACCTAACAGCATGACCGTGTTAGATGAGCTCTTACCCATATCCATTGAGATGGCTAAGAGGAATTTAAAAGGGATATGGAACTTTACCAATCCAGGAGTTATAAGCCATAATGAGATACTGAAATTGTATAGGGATTACATGGACCCAAAATTTAAATGGGAGAATTTTACTTTGGAAGAGCAGGCAAAGGTAATAGTTGCTTCTAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAAGGAGTTCCCAAATTTGTTGTCCATCAAAGATTCCATTATCAAATTTGTCTTTGAGCCTAACAAGAAAATATGA 1986 0.4008 MSSKPDMYEPRNILITGAAGFIASHVTTRLINNYPTYKIVALDKLDYCSTFKNLQSCNSSPKFKFIKGDIASVDIVNHILIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNCVKRFIHVSTDEVYGETNLETDIGNHEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGQKLPIHGNGSNVRSYLYSGDVAEAFDVILHKGVIGQIYNIGTKKERSVLDVAEDICKLFGSNSKEVIEFVQDRPFNDKRYFLDDQKLKKLGWEERTPWEEGLKMTIDWYKKNPDWWGDVSTALNPHPRFSAINLSDDAQWTFQYGYSRLLRSFTEVGRANSGLKFLIYGRTGWIGGLLGKLCDEERISWEYGRGRLEDRKSLMEDIKRVMPTHVLSAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEHGLYMMNFATGCIFEYDKEHPLGSGIGFKEEDKPNFSGSFYSKTKAMVEDLLKDYDNVCTLRVRMPISSDLSNPRNFITKISRYSKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVISHNEILKLYRDYMDPKFKWENFTLEEQAKVIVASRSNNEMDASKLKKEFPNLLSIKDSIIKFVFEPNKKI* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2774 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 334 IPR036291 -
Lja5g2774 661 Pfam NAD dependent epimerase/dehydratase family 407 544 IPR001509 -
Lja5g2774 661 CDD dTDP_HR_like_SDR_e 378 650 - -
Lja5g2774 661 CDD dTDP_GD_SDR_e 11 328 IPR005888 GO:0008460|GO:0009225
Lja5g2774 661 Pfam GDP-mannose 4,6 dehydratase 14 319 IPR016040 -
Lja5g2774 661 Gene3D - 204 326 - -
Lja5g2774 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 374 651 IPR036291 -
Lja5g2774 661 Gene3D - 13 317 - -
Lja5g2774 661 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 1 659 - -
Lja5g2774 661 Gene3D - 369 661 - -
Lja5g2774 661 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2774 Lja-Chr5 54935984 54938659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2774 12 323 Miscellaneous Gene Families AT1G02000 25.075 9.84e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2774 K12450 - gmx:100776241 1259.2