Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2619 ATGGCTCTGATATTTCTCTTTGCTATTTTACTCTTTATGATGGCGCCTTCAAGCAATGCCTATTGGCCACCTTCACCTGGCTACTGGCCAAGTTCAAAATTCAGGTCTACGAGCTTTAACAAAGGTTATAGAAACCTTTGGGGCCCTTCACACCAAAGACTAGATCAAAATGCATTAACAATTTGGCTTGACAGGACCTCAGGAAGCGGCTTCAAATCGGTTCGCCCATTTCGATCCGGGTACTTTGGTGCTTCTATTAAGCTCCATCCTGGGTATACTGCAGGAGTTATAACAGCTTTTTATCTTTCGAACAATGAAGCGCATCCGGGTTTCCATGATGAAGTGGACATTGAGTTTCTGGGGACTACATTTGGAAAGCCTTATACTTTGCAAACCAATGTTTATATAAGAGGGAGTGGTGATGGGAAAATTATAGGCAGAGAGATGAAGTTCCACCTCTGGTTTGATCCTACCAGACATTTTCATCACTATGCTATTCTTTGGAGTCCTAATGAAATAATATTCCTAGTGGATGATGTGCCCATAAGGAGGTACCCAAGGAAGAGTGCTGCAACATTTCCACTGAGGCCAATGTGGGTTTATGGTTCCATATGGGATGCATCATCATGGGCAACAGAAGATGGAAAGTACAAAGCTGATTACAGATACCAACCCTTTGTTGCAAGGTACACTAACTTCAAGGCTGGTGGTTGCTCAGCCTATGCCCCTCGGTGGTGCCACCCAGTCTCAGCCTCACCCTACAAGTCTGGTGGGTTGACCAGACAGCAACACTGGGCAATGAGATGGGTGCAGAGACACCACATGGTTTATAACTATTGCCAAGATCCCAAAAGAGACCACAGATTAACACCTGAGTGTTGGAGATCAGGGAATAACTAA 900 0.4467 MALIFLFAILLFMMAPSSNAYWPPSPGYWPSSKFRSTSFNKGYRNLWGPSHQRLDQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLHPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTRHFHHYAILWSPNEIIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTNFKAGGCSAYAPRWCHPVSASPYKSGGLTRQQHWAMRWVQRHHMVYNYCQDPKRDHRLTPECWRSGNN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2619 299 PIRSF EndGlu_transf 2 298 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lja5g2619 299 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 294 IPR044791 GO:0004553
Lja5g2619 299 SUPERFAMILY Concanavalin A-like lectins/glucanases 61 281 IPR013320 -
Lja5g2619 299 Gene3D - 19 293 - -
Lja5g2619 299 Pfam Glycosyl hydrolases family 16 40 222 IPR000757 GO:0004553|GO:0005975
Lja5g2619 299 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4 294 - -
Lja5g2619 299 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 18 230 IPR000757 GO:0004553|GO:0005975
Lja5g2619 299 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 256 293 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2619 Lja-Chr5 52037532 52040052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2619 1 293 Glycoside Hydrolase AT3G44990 64.846 1.69e-143 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2619 K08235 - gmx:100796698 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0822 1 7993870 7996814 Lja5g2619 5 52037532 52040052 PCT