Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2163 ATGGATCCATCAACCCAATTTTCTGGCTTTCAGGTGAATCCTGAACAAAACCCTAACCCTAACCCTAATATTTTCTTAGATTCAATCCCAAATTCTGTCGAAAATCCTAGCGTGAGCCACTACCTCTCTTTCTCTGTCCCCAAGAAGAGGAGGTGTGGCAGGTCCCAACGCAATCCGGCGATTCCACTCATCTTCAACAACGATCTTGCCTCCTATGCCGCCACTGTTTCAGTTGCCTCTGACATTTCCGATGAAATTATTGTGATAAACAAAGAAGCCAAAACAGAGGCCATGATCGCACTCAGTGCTGGTTTCCCGGCTGATTCCCTGACGGAGGAGGAGATTGAAGCCGCGGTTCTCACCGTCATCGGTGGGATCGAACAGGTGAATTACACTCTCATTAGGAACCACATTATTGCTAAATGGCGTGAAAATGTGTCCAGTTGGGTCAGTAAGAAGATGTTCACTGATTATATACCCCACCATTATCACTCCCTTTTGGACGCTGCTTATAGTTATCTGGTCTCACATGGTTATATCAATTTTGGTGTTGCGCCCCCTATTAAGGAAAAAATTCCTGCTGAACCGACTAAGCCTGCTGTAATTGTCATTGGGGCTGGCCTTGCTGGGTTGGCTGCTGCGCGGCAGCTCATGCGGTTCGGGTTCAAAGTGACAGTGTTAGAAGGTAGGAAACGTGCTGGGGGACGGGTTTATACCAAGAAAATGGAGGTAGGGAATAGGGTATCTGCAGCTGCTGATTTAGGTGGGAGTGTTTTGACAGGTACCTTGGGGAACCCACTCGGGATTCTGGCTAGGCAGTTGGGTGATATGCTTCATAAGGTGAGAGATAAGTGTCCTCTCTACCGTGTGGATGGAAAGCCTGTTGACCCTGATACGGATGTCAAGGTGGAATCTGCTTTTAACCGTTTATTAGACAAGGCTAGCAGGCTAAGGCAATTAATGGGGGAGGTCTCTGTTGACGTGTCACTTGGTGCAGCGCTGGACACATTCAGGCAAGTCTATAAGGATGCAGTAAATGATGAGGAGATGAACTTGTTCAATTGGCATCTTGCGAACTTGGAGTATGCAAATGCTGGTTTACTATCACATCTTTCACTTGCATTTTGGGACCAAGATGATCCGTATGATATGGGAGGAGATCACTGCTTTTTGCCTGGTGGAAATGGAAAGCTTGTTCAAGCCTTGGCTGAGAATGTGCCTATTTTATATGAGAAAACTGTACATACGATTAGGTACAGTAGTAATGGAGTGCAGGTTCTTGCCGGAAGTCAGGTATTTGAGGGTGATATGGCATTGTGCACTGTTCCTCTAGGTGTGTTAAAGAAAGGGTCTATAAAATTTATTCCAGAATTGCCTCAAAGAAAACTTGATGGAATAAAAAGATTGGGTTTTGGTCTACTGAACAAGGTTGCTATGCTTTTTCCTCATGTGTTCTGGGAGACAGATCTTGACACATTTGGGCATCTTTCGGATGATCCAAGCCGTCGTGGGGAATTTTTTTTGTTTTACAGTTATGCAACAGTTGCTGGTGGTCCCCTGTTGATTGCTTTAGTAGCAGGGGAAGCTGCGCATAAATTTGAGAGCATGCCCCCTACAGATGCAGTCACACGGGTTCTTCAAATTCTCAAGGGTATTTATGAACCAAAAGGAATCAACGTTCCTGAACCTATCCAAACTGTCTGTACTAGATGGGGTAGTGATCCCTTCTGTTTTGGTTCTTACTCAAATGTTGCAGTTGGAGCTTCAGGTGATGATTATGATATTTTAGCTGAAAGTGTGGGAGATGGTAGACTTTTCTTTGCTGGGGAGGCAACCACTAGGCGCTATCCTGCTACTATGCATGGGGCTTTTCTAAGTGGTCTAAGAGAAGCTTCAAATATGTCCCACTTTGCTAATATTCGATCACTGAAGATGAAGGTTGAGAAGACCCCTTCAAATGCTCATTCTTGTGCTTCTCTTCTGGCAGATTTATTCAGAGAACCTGATGTAGAATTTGGGAGCTTTGCTGTCATTTTTGCTCAGAAGAATGCAGACCCCAAGTCACCAGCAATCTTGAGGGTAACATTTGGTGAATCTAGAAAGAGGTGTCATGAAGTTGCAAAACAAGATCAACAATACTCAAACAAATTACTCTTTCAGCAGCTTCAGTCACATTTTAATCAGCAGCAGCAGCTTCATGTTTACACTTTATTGTCAAGACAACAGTTTCTTGACCTAAGAGAGGTTAGAGGCGGTGATGAAATGAGATTGAATTTCCTTTGTGAGAAGCTAGGAGTAAGGCTGGTAGGGAGAAAAGGATTGGGGATGAATGCTGATTCTGTCATTGCTTCAATTAAAGCTGAGAGGGGCAACCGTAAACCCGTATCAACCTCAATGACTCTTAAACCAGGGGCGACAAAGCTGAAAGCAGGCATTCTGAAGCGAAAGTTCATCAGAAAGGCAAAAGTGGTGAAGAAAAGCAATGGTTCCTTGCCTCATGCTATCACAAATGTGGGGAGTGCCTCTAAAGTATCAGAAGAGGTTCCGATAATAGCTCAAGTGCTTCCTGATGTACTTGTTTCAGAAAGTTGA 2592 0.4437 MDPSTQFSGFQVNPEQNPNPNPNIFLDSIPNSVENPSVSHYLSFSVPKKRRCGRSQRNPAIPLIFNNDLASYAATVSVASDISDEIIVINKEAKTEAMIALSAGFPADSLTEEEIEAAVLTVIGGIEQVNYTLIRNHIIAKWRENVSSWVSKKMFTDYIPHHYHSLLDAAYSYLVSHGYINFGVAPPIKEKIPAEPTKPAVIVIGAGLAGLAAARQLMRFGFKVTVLEGRKRAGGRVYTKKMEVGNRVSAAADLGGSVLTGTLGNPLGILARQLGDMLHKVRDKCPLYRVDGKPVDPDTDVKVESAFNRLLDKASRLRQLMGEVSVDVSLGAALDTFRQVYKDAVNDEEMNLFNWHLANLEYANAGLLSHLSLAFWDQDDPYDMGGDHCFLPGGNGKLVQALAENVPILYEKTVHTIRYSSNGVQVLAGSQVFEGDMALCTVPLGVLKKGSIKFIPELPQRKLDGIKRLGFGLLNKVAMLFPHVFWETDLDTFGHLSDDPSRRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMPPTDAVTRVLQILKGIYEPKGINVPEPIQTVCTRWGSDPFCFGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFLSGLREASNMSHFANIRSLKMKVEKTPSNAHSCASLLADLFREPDVEFGSFAVIFAQKNADPKSPAILRVTFGESRKRCHEVAKQDQQYSNKLLFQQLQSHFNQQQQLHVYTLLSRQQFLDLREVRGGDEMRLNFLCEKLGVRLVGRKGLGMNADSVIASIKAERGNRKPVSTSMTLKPGATKLKAGILKRKFIRKAKVVKKSNGSLPHAITNVGSASKVSEEVPIIAQVLPDVLVSES* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2163 863 SUPERFAMILY Homeodomain-like 92 195 IPR009057 -
Lja5g2163 863 Pfam SWIRM domain 105 182 IPR007526 GO:0005515
Lja5g2163 863 SUPERFAMILY FAD/NAD(P)-binding domain 196 634 IPR036188 -
Lja5g2163 863 PANTHER PROTEIN FLOWERING LOCUS D-LIKE 139 830 - -
Lja5g2163 863 PANTHER FLAVIN MONOAMINE OXIDASE 139 830 - -
Lja5g2163 863 SUPERFAMILY FAD-linked reductases, C-terminal domain 470 582 - -
Lja5g2163 863 MobiDBLite consensus disorder prediction 1 23 - -
Lja5g2163 863 Gene3D - 201 632 IPR036188 -
Lja5g2163 863 Gene3D - 283 589 - -
Lja5g2163 863 Gene3D - 95 194 IPR036388 -
Lja5g2163 863 ProSiteProfiles SWIRM domain profile. 90 191 IPR007526 GO:0005515
Lja5g2163 863 Pfam Flavin containing amine oxidoreductase 208 634 IPR002937 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2163 Lja-Chr5 33779776 33786871 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Lja5g2163 Amino_oxidase 7.1e-95 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2163 - - gmx:100786453 1402.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2163 5 33779776 33786871 Lja5g2163 5 33779776 33786871 ECH