Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2159 ATGAGGATCGAGCAAGAAAGTGATGTAGTCTCCGCTTCCACAAAGCACCTCGTCTTTGCATATTACATCACTGGTCACGGTTTTGGCCATGCCACCCGAGTCACCGAGGTGGTGCGGCATTTGATCTATGCGGGGCATGATGTGCATGTGGTCACTGGTGCTCCTGATTTTGTATTCACCTCTGAAATACAGTCTCCTCGCCTATTCATTCGAAAGGTGCTTTTGGATTGTGGAGCTGTTCAGGCAGATGCTTTAACTGTGGATCGTCTGGCTTCATTGGAGAAGTATTCTGAAACAGCAGTGAAGCCCCGTGCGAGTATCTTGGCAAAAGAAACAGAGTGGCTGCACTCTATCAAAGCTGACTTAGTGGTGTCTGATGTTGTCCCAGTTGCATGCCGTGCGGCAAAGGATGCTGGCATTCGTTCTGTTTGTGTGACTAATTTCAGTTGGGACTTCATCTATGCAGAGTATGTCATGGCTGCTGGACTTCATCATCGTTCAATAGTATGGCAGATAGCTGAGGACTATTCCCATTGTGAGTTCCTTATCCGCCTCCCGGGATATTGCCCAATGCCTGCTTTTCGTGATGTTATTGATGTCCCTCTGGTGGTGAGGAGGTTGCACAAATCTGCAAAAGAGGTGAGGAAGGAACTTGGGGTAGCTGATGATGTGAAGCTAGTTATTCTCAACTTTGGTGGGCAGCCATCAGGATGGAAGCTAAAGGAAGATTTCTTACCTTCTGGCTGGTTGTGCCTGGTTTGTGGTGCTTCTGAAAATGTGGACCTTCCACCAAACTTCATAAAACTTGCTAAAGATGCATACACACCTGATATTATTGCAGCATCTGACTGTATGCTTGGAAAAATTGGATATGGCACTGTTAGTGAAGCCCTGGCATACAAGTGTCCTTTTGTTTTTGTACGTAGAGATTATTTCAATGAAGAACCTTTTTTAAGAAATATGCTTGAGTATTCTCAATGCGGCGTTGAAATGATTAGGAGGGATTTACTCACTGGTCACTGGAGACCTTATCTTGAACGTGCAATAAGTTTAAAACCCTGCTATGAAGCAGGCATTAATGGTGGTGAGGTGGCAGCCCACATCCTGCAGGAGACAGCTTTTGGAAAAAACTATGCATCAGATAAGCTAAGTGGGGCAAGAAGATTGCGGGATGCGATAGTTCTTGGGTATCAACTCCAAAGGGCCCCTGGTCGGGATATTGCAATCCCAGAATGGTATGCAACTGCAGAAGACCAACTTGGCCACTCATCACCTAGTTCCCCTGTGGATGAAGGAAGCTCTGCATTCTACTCAGCAATCGAAGACTTTGACATTCTTCACGGAGATGTTCAAGGTCTTCCAGATACTGTAGCATTCTTAAAGAGCCTATCTGAATTGGATGAGAAGCACAAAAGGCGGGAGCGTAAAGCTGCAGCTAATCTCTTCAACTGGAAGGAAGAGATTATTGTAACAAGAGCTCCGGGAAGGTTAGATGTAATGGGTGGTATTGCTGACTATTCTGGAAGCCTTGTCCTGCAGATGCCAATTAAAGAAGCCTGCCATGTCGCTTTGCAAAGAGTCCATCCAAGTAAGCATAGACTGTGGAAACATGCTGAGGCTCGACAGAATGACAAAGGGGGAAATCCAACAGCTGTCTTGCAAATTGTATCATATGGTTCAGAACTGGGCAATCGTGGCCCAACATTTGACATGGATTTGTCTGATTTTATTGAAGAAGGAAGACCAATCTCATATGAGAAAGCAAAGAAATACTTTGCTCAAGATCCGTCTCAAAAGTGGGCAGCATATGTTGCTGGTGCAATTGTGGTCTTAATGACTGAATTGGATGTGAGATTTGAAGATAGTATCAGTGTGCTGGTTTCGTCTGCAGTCCCAGAAGGGAAAGGTGTATCATCTTCTGCATCTGTGGAGGTTGCTAGCATGTCTGCTATTGCAGCTGCTCATGGATTAAATATCAGCCCAAGGGATCTGGCTTTGCTTTGCCAGAAGGTGGAAAATCACATTGTAGGAGCTCCATGTGGTGTCATGGACCAGATGACTTCAGCATGTGGTGAAGCCAACAAACTTCTTGCTATGATTTGCCAGCCTGCAGAGATTGTTGGACTTGTTGAAATTCCCAGCCATATCCGGGTCTGGGGTATTGATTCTGGAATAAGACACAGTGTTGGAGGTGCAGACTATGGATCTGTCAGAATAGGCACCTTTATGGGTATGAAGATGATAAAGTCCAAGGCTTCTGAGGAATTGTCTCAGATGTGTGCTGCTAATGGGTTGAACTATGAAGAAGTGGAACAAGATGATATAGAACTGCTCAAACAAGAAGCCTCCTTAGATTACTTGTGTAATTTGTCACCTCACAGATTTGAGGCTCTATATGCTAAGACGATTCCTGACTCCATTGTCGGTGAGACATTTTTAGCGCAATATAAAAATCACAATGATCCTGTCACTATTATTGATGAGAAGTGTAGTTATGGAGTGAGAGCTCCCACAGTACATCCTATCTATGAAAATTTCCGAGTCAAGACCTTCAAGGCGCTTCTAACATCGGCAAGTTCAACTGATCAACTTACAGTCTTAGGAGGATTGTTGTATCAGTGCCACTATAGCTACAGTGCTTGTGGACTTGGCTCTGATGGAACAGATAGGCTTGTGCACTTAGTGCAAGAACTGCAGCATAGTGCAACATCTAAATCTGAAGGAGGGACGTTATACGGAGCCAAGATCACTGGTGGGGGTTCAGGTGGAACGGTTTGCGTAATCGGAAGAAATTGTCTCAAGAGCAGTGAACAAATTTTTGAGATTCAGCAAAGGTACAAAAAAGCTACAGGTTATTTGCCGTTTATTTTTGAGGGTTCATCACCAGGTGCAGGAAAGTTTGGCTACCTGAAATTACGCCGGCGAGCTGCTACCCTAAAAAATTGTAACAGCTACGGGGATGTTAGTGCAGTTTTGGAGGAGAATAACGCATCAGGATCCCCTACAGTTTCAACGTGA 3018 0.4473 MRIEQESDVVSASTKHLVFAYYITGHGFGHATRVTEVVRHLIYAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVKPRASILAKETEWLHSIKADLVVSDVVPVACRAAKDAGIRSVCVTNFSWDFIYAEYVMAAGLHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSAKEVRKELGVADDVKLVILNFGGQPSGWKLKEDFLPSGWLCLVCGASENVDLPPNFIKLAKDAYTPDIIAASDCMLGKIGYGTVSEALAYKCPFVFVRRDYFNEEPFLRNMLEYSQCGVEMIRRDLLTGHWRPYLERAISLKPCYEAGINGGEVAAHILQETAFGKNYASDKLSGARRLRDAIVLGYQLQRAPGRDIAIPEWYATAEDQLGHSSPSSPVDEGSSAFYSAIEDFDILHGDVQGLPDTVAFLKSLSELDEKHKRRERKAAANLFNWKEEIIVTRAPGRLDVMGGIADYSGSLVLQMPIKEACHVALQRVHPSKHRLWKHAEARQNDKGGNPTAVLQIVSYGSELGNRGPTFDMDLSDFIEEGRPISYEKAKKYFAQDPSQKWAAYVAGAIVVLMTELDVRFEDSISVLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNISPRDLALLCQKVENHIVGAPCGVMDQMTSACGEANKLLAMICQPAEIVGLVEIPSHIRVWGIDSGIRHSVGGADYGSVRIGTFMGMKMIKSKASEELSQMCAANGLNYEEVEQDDIELLKQEASLDYLCNLSPHRFEALYAKTIPDSIVGETFLAQYKNHNDPVTIIDEKCSYGVRAPTVHPIYENFRVKTFKALLTSASSTDQLTVLGGLLYQCHYSYSACGLGSDGTDRLVHLVQELQHSATSKSEGGTLYGAKITGGGSGGTVCVIGRNCLKSSEQIFEIQQRYKKATGYLPFIFEGSSPGAGKFGYLKLRRRAATLKNCNSYGDVSAVLEENNASGSPTVST* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2159 1005 PANTHER MEVALONATE KINASE/GALACTOKINASE 17 972 - -
Lja5g2159 1005 Gene3D - 467 718 IPR014721 -
Lja5g2159 1005 PRINTS Mevalonate kinase family signature 672 691 - -
Lja5g2159 1005 PRINTS Mevalonate kinase family signature 493 517 - -
Lja5g2159 1005 PRINTS Mevalonate kinase family signature 629 651 - -
Lja5g2159 1005 PRINTS Mevalonate kinase family signature 913 930 - -
Lja5g2159 1005 Pfam GHMP kinases N terminal domain 625 691 IPR006204 GO:0005524
Lja5g2159 1005 PIRSF Gal_kin_glcsltr 1 978 IPR012369 -
Lja5g2159 1005 SUPERFAMILY GHMP Kinase, C-terminal domain 717 966 IPR036554 -
Lja5g2159 1005 Gene3D Glycogen Phosphorylase B; 13 169 - -
Lja5g2159 1005 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 24 335 - -
Lja5g2159 1005 Gene3D - 829 951 IPR036554 -
Lja5g2159 1005 Pfam Galactokinase galactose-binding signature 482 525 IPR019539 -
Lja5g2159 1005 PANTHER L-ARABINOKINASE 17 972 - -
Lja5g2159 1005 SUPERFAMILY Ribosomal protein S5 domain 2-like 482 705 IPR020568 -
Lja5g2159 1005 Gene3D Glycogen Phosphorylase B; 208 350 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2159 K12446 - gmx:100787860 1765.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2159 5 33339183 33354230 Lja5g2159 5 33339183 33354230 ECH