Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1940 ATGAGGACATTCTTCAGTGGAGAATCATGTAAAGAAGCACCCCCAAATGCTCTTAATCCACAGTCCTGGCTCCAAGTTGAAAGAGGGAAGCTTCCCAAGTTGTCACCACAGTCCTCCTCTACATCAATAGAATCTCTAATCAAGGTCCCCCAACCACCCATACTCCAATATTTTAAACCTGTTGATTATGTCGAAGTTTTGGCCCAAATCCATGAAGAACTTGAGTCTTGTGCTCCACAGGAGCAATCAAATCTGTTTTTGTTGCAATATCAGATCTTTAGGGGCCTTGGGGATGTTAAATTGATGAGAAGAAGCATCCGGGAAGCTTGGCAGAGAGCCAGCACTGTTCATGAGAAGATTATATTTGGGGCATGGTTGAAGTATGAGAAGCATGGGGAAGAGGTAATTGCTGGCTTACTCACAAGTAAATGTGAAAAAGAATATGAGCCCATAGATGTAGAATCTCATCTTACTTTTGATACAGATGTAAGTTCCCATGAGAGAGTTTTGATGAATGGGAAACATAGTTCACAATATGTTATTTTTACCATTGGAAATGAGAAGATAACCTGTGATAGGCAAAAGATATCTGAGCTTTCAGCACCATTTCATGCAATGCTGAATGGGTATTTTAGGGAATCATTTTCTGAGACCATAGATTTGTCTGAAAACAATATCTCCCCTTCATGTATGAGGGCAATAAGTTATTTCAGTTCAACAGGCAGTTTACTTGATGCCCCTCCAAATCTTTTGCTGGAGATGTTAGTTTTTGCCAACAAGTATTGTTGTGATAGACTTAAAAAGGCTTGTGATAGAAGACTTGCATCCTTAGTTTCCTCTAAAGAAGATGCTTTGGAACTCATGGAATGTGCTCTTGATGAGAGCTCAGCTGTCCTTGCAGCTTCTTGTTTACAAGTTCTTTTACGTGATGTTCCCGGCTGCTTGAGTGACAATCAGGTGGTGGAGTTATTTGTTACTGCTAATAGGCAGCGGTTAGCAGTCATGGTTGGGCCAGGTTTATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCGGACACGACAGCTCATTTTCTGGAACGGTTAGTTGATTTTGCTGAAAATGACAAGCAGAAACTGCTGGCATGTCATCAATTGGGATGTGTAAGACTCTTAAGGAAAGAATTTGATGAAGCTCAATACCTTTTTCAAAGGGCTGTAAATGCAGGGCATATTTATTCTGTTGCGGGTTTAGCTAGACTGGACTGCATAAAGGGAGAGATGCTTTTAGCAAATGAGAAGATCAGCTCAGTCATTTCATCAGTTACTCCACACGGATGGATGTACCAGGAAAGATCGCTATACTGTGACGGTGATACGAGGTGGAAAGACCTTGAGGAAGCAACTAAACTGGATCCTACTCTTGTCTATCCCTATATGTATAGAGCTTCCACTTTAATGAGGATGGAGAACTCTCAAGGTGCACTGGCTGAAATCAATCGGATTCTTGGCTTCAAACTTTCATTAGAATGCTTGGAACTAAGGTTTCTTATCTATCTGGGTCTTGAGAACTACAAAGCAGCCCTCCGCGATGTTCAAGCAATCCTCACTCTATGTCCATATTATAGAATGTTTGAGGGGCGCGTTGCTGCATCTCAACTCCGTACTCTTGTGCGTGAGCATGTTGAACACTGGACAACCGCAGATTGTTGGGCACAATTATATGACTGTTGGTCTTCTGTGGATGATATTGAGTCTCTATCTGTTATTTATCAGATGCTTGAAAAATCTGATGCAGCAAAAGGTGTTCTATACTTCAGACAGTCATTACTTCTCCTCAGGCTAAATTGTCCTGAGGCAGCTATGCGGAGTTTACAGCTAGCTTGGAAACATGCATCAAGTGAGCATGAACGATTTGTATATGAGGGGTGGATCTTGTATGATACAGGTCATTATGAGAAAGGGCTTCAAAAAGCTGAAGAGTCTCTTGGTATTAAAAGGTCTTTTGAGGCCTACTTCCTGAAGGCGTATGCATTGGCAGACTCTAGTCTAGATTCATCATGTTCTTCAACTGTTATTTCTCTCCTCGAAGATGCCTTGAGGTGTCCTTCTGATAATCTGCGCAAAGGTCAGGCCCTGAACAATCTTGGAAGTGTTTTTGTTGAATGCGGGAAATTGGATGAAGCAGCTGATTGCTATATCAAAGCCCTTAAAATCCGGCACACCCGAGCCCATCAGGGTCTTGCTCGTGTTCATTTTCTGAAAAACGACAAGACTGCAGCTTACAAGGAAATGACCAATCTCATTGAGAAGGCGAAAAACAATGCATCAGCTTATGAGAAAAGGTCTGAGTATGGTGATCGTGAACACACAAGGGAAGATCTGGAGACGGTGACAAGATTAGACCCACTTCGGGTGTATCCTTATAGATATCGAGCAGCAGTTTTGATGGACAACCATAAGGAAGAGGAGGCCATTGCTGAACTATCTAGAGCAATTGCGTTTAAAGCTGATTTGCACCTCTTACATCTACGTGCTGCATTCCATGAACACAAGGGGGATGTATTAGGTGCGCTGAGAGACTGTCGTGCTGCACTCTCAGTGGACCCAAACCACCAAGAAATGCTGGACCTTCACACTCGTGTTAATAGCCACGAGCCATGA 2661 0.4231 MRTFFSGESCKEAPPNALNPQSWLQVERGKLPKLSPQSSSTSIESLIKVPQPPILQYFKPVDYVEVLAQIHEELESCAPQEQSNLFLLQYQIFRGLGDVKLMRRSIREAWQRASTVHEKIIFGAWLKYEKHGEEVIAGLLTSKCEKEYEPIDVESHLTFDTDVSSHERVLMNGKHSSQYVIFTIGNEKITCDRQKISELSAPFHAMLNGYFRESFSETIDLSENNISPSCMRAISYFSSTGSLLDAPPNLLLEMLVFANKYCCDRLKKACDRRLASLVSSKEDALELMECALDESSAVLAASCLQVLLRDVPGCLSDNQVVELFVTANRQRLAVMVGPGLFALFCFLSEVSMNLNSSSDTTAHFLERLVDFAENDKQKLLACHQLGCVRLLRKEFDEAQYLFQRAVNAGHIYSVAGLARLDCIKGEMLLANEKISSVISSVTPHGWMYQERSLYCDGDTRWKDLEEATKLDPTLVYPYMYRASTLMRMENSQGALAEINRILGFKLSLECLELRFLIYLGLENYKAALRDVQAILTLCPYYRMFEGRVAASQLRTLVREHVEHWTTADCWAQLYDCWSSVDDIESLSVIYQMLEKSDAAKGVLYFRQSLLLLRLNCPEAAMRSLQLAWKHASSEHERFVYEGWILYDTGHYEKGLQKAEESLGIKRSFEAYFLKAYALADSSLDSSCSSTVISLLEDALRCPSDNLRKGQALNNLGSVFVECGKLDEAADCYIKALKIRHTRAHQGLARVHFLKNDKTAAYKEMTNLIEKAKNNASAYEKRSEYGDREHTREDLETVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKGDVLGALRDCRAALSVDPNHQEMLDLHTRVNSHEP* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1940 886 Gene3D Tetratricopeptide repeat domain 783 885 IPR011990 GO:0005515
Lja5g1940 886 SUPERFAMILY TPR-like 693 876 IPR011990 GO:0005515
Lja5g1940 886 SMART tpr_5 838 871 IPR019734 GO:0005515
Lja5g1940 886 SMART tpr_5 379 412 IPR019734 GO:0005515
Lja5g1940 886 SMART tpr_5 709 742 IPR019734 GO:0005515
Lja5g1940 886 SMART tpr_5 508 541 IPR019734 GO:0005515
Lja5g1940 886 SMART tpr_5 635 668 IPR019734 GO:0005515
Lja5g1940 886 SMART BTB_4 178 278 IPR000210 GO:0005515
Lja5g1940 886 SUPERFAMILY TPR-like 460 780 IPR011990 GO:0005515
Lja5g1940 886 Gene3D Tetratricopeptide repeat domain 362 546 IPR011990 GO:0005515
Lja5g1940 886 PANTHER ETO1-LIKE PROTEIN 1 1 886 - -
Lja5g1940 886 ProSiteProfiles TPR repeat profile. 709 742 IPR019734 GO:0005515
Lja5g1940 886 Coils Coil 754 781 - -
Lja5g1940 886 Gene3D Tetratricopeptide repeat domain 598 771 IPR011990 GO:0005515
Lja5g1940 886 PANTHER ETO1-RELATED 1 886 IPR044631 GO:0010105
Lja5g1940 886 SUPERFAMILY POZ domain 180 274 IPR011333 -
Lja5g1940 886 Gene3D Potassium Channel Kv1.1; Chain A 168 317 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1940 Lja-Chr5 24249594 24254813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1940 710 873 Glycosyltransferase AT3G04240 25.862 2.72e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1940 - - gmx:100785039 1488.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1094 1 10911151 10912501 Lja5g1940 5 24249594 24254813 PCT