Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1634 ATGATCTCCGTGCAGGGAGACCACCACCGCCACCAGTACCACCACCACTTGCAGATTCCTGGTTCTTCCGACACTTCTCGGCTTCAGTTCACCGCGGATCGCGTTGAACCGTTCTCCGTTAAGCAGGAACCCTCGCTCACTCTTTTGCCCTTGCGCAGCCATGATTCCAGTGAAGTTGATGAAGATTTGCATCTGTCCCTTGCACATCAAATGTACAAATCTGGAAGTTATAAGAAAGCGCTAGAACATAGCAACATTGTCTATGACAGAAATCCGCTCCGTACTGATAACTTACTGCTCCTCGGAGCAATTTACTACCAGTTGCATGATTTTGATATGTGTGTGGCGAAGAATGAAGAAGCACTTAGGGTGGAGCCACACTTCGCCGAGTGTTATGGGAATATGGCAAATGCATTGAAAGAAAAAGGCAACATTGACCTTGCAATTCGCTACTACTTGATTGCCATTGAGTTTCGTCCCAATTTTGCTGACGCATGGTCAAACCTAGCTAGCGCATACATGCGTAAAGGAAGACTCACTGAAGCAGCTCAGTGTTGTCGTCAAGCACTTGCTATAAACCCTCTAATGGTTGATGCTCATAGCAACTTGGGTAATCTAATGAAAGCTCAAGGGCTGGTCCAAGAAGCATACAGTTGTTACCTTGAGGCATTGCGCATTCAGCCTACCTTTGCTATTGCATGGTCAAATCTTGCTGGTCTGTTCATGGAATCTGGTGATTTCAACAGAGCCCTTCAGTATTACAAGGAAGCTGTAAAACTAAAACCTTCTTTCCCTGATGCTTATCTGAACCTTGGGAATGTGTACAAGGCTCTAGGGATGCCTCAAGAAGCTATTGCATGCTATCAACATTCTCTTCAAACACGACCAAACTATGCCATGGCTTATGGTAATTTGGCCAGTATATACTATGAGCAAGGTCAACTGGACATGGCAATTCTACACTATAAACAAGCTATTGGATGTGACCCCAGATTTTTGGAAGCTTACAATAATTTGGGTAATGCTCTAAAAGATGTTGGCAGAGTGGAGGAAGCAATCCAGTGCTATAATCAATGCCTTTCATTGCAGGCTAACCATCCACAGGCTTTGACCAATCTTGGAAATATATACATGGAATGGAACATGGTAGCTGCTGCTGCTTCATATTATAAAGCTACACTGAGTGTGACCACTGGATTATCCGCTCCTTATAACAATCTTGCTATAATCTATAAGCAGCAGGGAAATTATGCAGATGCCATATCATGCTACAATGAGGTCCTCCGCATTGATCCCTTGGCTGCTGATGGTCTGGTAAATAGAGGGAATACATTTAAGGAGATTGGTAGAGTTAGTGATGCTATCCAGGATTACATACGTGCAATTACTGTCAGGCCTACTATGGCTGAAGCCCACGCTAATTTGGCGTCAGCTTATAAAGATAGTGGACATGTTGAGGCTGCTGTGAAGAGCTATAAACAGGCATTGATTCTTCGTGCAGACTTTCCTGAAGCAACTTGCAATCTCCTACATACACTTCAGTGTGTCTGTTCTTGGGAGGATCGTGATAAAATGTTCAAGGAGGTTGAAGGGATAATCAGGAGACAGATTAATATGTCAGTTCTTCCAAGTGTCCAGCCTTTCCATGCAATAGCATATCCACTGGACCCCATGCTTGCTCTGGACATTAGTCGAAAATATGCTGCACACTGCTCTGTAATTGCTTCCCGTTTTGCTCTTCCACCATTCAGCCATCCCGCTTCTATTCCAATCAAGCGGGAGGGAGGTTACGAAAGACTAAGGGTTGGGTATGTGAGTAGTGACTTTGGTAATCACCCCTTGTCACATCTCATGGGATCTGTTTTTGGTATGCATAATAGGAAGAATGTTGAGGTATTCTGTTATGCCTTGAGTCCAAATGATGGTACTGAGTGGAGACAGCGTATACAGTCTGAAACAGAGCACTTTGTGGATGTATCTGCCATGTCATCGGATATGATAGCAAAAATGATCAATGAGGATAAAATACAAGTCCTTGTCAATCTTAATGGTTATACGAAGGGTGCCAGAAATGAGATATTTGCTATGAAACCTGCACCTATTCAAGTTTCATATATGGGATTCCCTGGAACAACAGGGGCTTCTTACATAGACTATTTAGTCACTGATGAGTTCGTGTCCCCGTTACAGTATGCACACATTTATTCTGAAAAGATTGTCCACCTGCCCCATTGCTACTTTGTTAATGATTATAAACAGAAAAATCTGGATGTGTTGGACCCAAACTGCCAGCACAAACGATCAGATTATGGTCTACCTGAGGATAAATTTCTGTTCGCATGCTTCAATCAACTTTACAAGATGGATCCTGATATATTTAACACATGGTGCAATATTCTTAAACGTGTACCCAACAGTGCACTTTGGCTCCTGCGATTTCCTGCAGCAGGCGAAATGAGACTGAGGGCATATGCTGTTGCACAAGGGGTACAGCCCGATCAAATAATTTTTACTGATGTTGCAATGAAGCAGGAACACATCAGACGGAGTTCTTTAGCAGACTTATTCCTTGACACGCCTTTATGCAATGCACATACAACTGGAACAGATATATTATGGGCAGGCTTGCCAATGGTTACTCTGCCTCTTGAGAAAATGGCTACTAGAGTCGCTGGGTCACTCTGTCTCTCGACTGGACTCGGGGAGGAGATGATTGTTAGCAGCATGAAAGAGTATGAAGAAAGGGCAGTATCACTAGCTCTGAATCGCCCGAAGCTTCAAGCTCTTACTAACAAGCTCAAAGCAATACGCACAACCTGCCCTCTATTCGACACAGCTCGCTGGGTGAAGAATCTGGACAGAGCATTTTTCAAAATGTGGAATCTGCATTGCTCTGGCCAACGCCCACAGCATTTTAAGGTCACTGAAAATGATGTTGAATGCCCTTATGATAAATAG 2958 0.4364 MISVQGDHHRHQYHHHLQIPGSSDTSRLQFTADRVEPFSVKQEPSLTLLPLRSHDSSEVDEDLHLSLAHQMYKSGSYKKALEHSNIVYDRNPLRTDNLLLLGAIYYQLHDFDMCVAKNEEALRVEPHFAECYGNMANALKEKGNIDLAIRYYLIAIEFRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAINPLMVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDFNRALQYYKEAVKLKPSFPDAYLNLGNVYKALGMPQEAIACYQHSLQTRPNYAMAYGNLASIYYEQGQLDMAILHYKQAIGCDPRFLEAYNNLGNALKDVGRVEEAIQCYNQCLSLQANHPQALTNLGNIYMEWNMVAAAASYYKATLSVTTGLSAPYNNLAIIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTFKEIGRVSDAIQDYIRAITVRPTMAEAHANLASAYKDSGHVEAAVKSYKQALILRADFPEATCNLLHTLQCVCSWEDRDKMFKEVEGIIRRQINMSVLPSVQPFHAIAYPLDPMLALDISRKYAAHCSVIASRFALPPFSHPASIPIKREGGYERLRVGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSPNDGTEWRQRIQSETEHFVDVSAMSSDMIAKMINEDKIQVLVNLNGYTKGARNEIFAMKPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLQYAHIYSEKIVHLPHCYFVNDYKQKNLDVLDPNCQHKRSDYGLPEDKFLFACFNQLYKMDPDIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCLSTGLGEEMIVSSMKEYEERAVSLALNRPKLQALTNKLKAIRTTCPLFDTARWVKNLDRAFFKMWNLHCSGQRPQHFKVTENDVECPYDK* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1634 985 ProSiteProfiles TPR repeat profile. 469 502 IPR019734 GO:0005515
Lja5g1634 985 ProSiteProfiles TPR repeat profile. 435 468 IPR019734 GO:0005515
Lja5g1634 985 ProSiteProfiles TPR repeat profile. 333 366 IPR019734 GO:0005515
Lja5g1634 985 Gene3D Tetratricopeptide repeat domain 64 433 IPR011990 GO:0005515
Lja5g1634 985 ProSiteProfiles TPR repeat region circular profile. 231 263 - -
Lja5g1634 985 ProSiteProfiles TPR repeat profile. 231 264 IPR019734 GO:0005515
Lja5g1634 985 Gene3D Tetratricopeptide repeat domain 435 472 IPR011990 GO:0005515
Lja5g1634 985 Gene3D Tetratricopeptide repeat domain 473 575 IPR011990 GO:0005515
Lja5g1634 985 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Lja5g1634 985 Pfam Glycosyl transferase family 41 516 753 IPR029489 -
Lja5g1634 985 Pfam Glycosyl transferase family 41 766 952 IPR029489 -
Lja5g1634 985 ProSiteProfiles TPR repeat region circular profile. 163 194 - -
Lja5g1634 985 SUPERFAMILY TPR-like 63 333 IPR011990 GO:0005515
Lja5g1634 985 SUPERFAMILY TPR-like 349 849 IPR011990 GO:0005515
Lja5g1634 985 ProSiteProfiles TPR repeat profile. 401 434 IPR019734 GO:0005515
Lja5g1634 985 ProSiteProfiles TPR repeat region circular profile. 401 432 - -
Lja5g1634 985 Pfam Tetratricopeptide repeat 129 161 IPR019734 GO:0005515
Lja5g1634 985 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT 56 985 IPR037919 GO:0006493|GO:0016757
Lja5g1634 985 ProSiteProfiles TPR repeat region circular profile. 265 297 - -
Lja5g1634 985 Gene3D Glycogen Phosphorylase B; 766 939 - -
Lja5g1634 985 SMART tpr_5 333 366 IPR019734 GO:0005515
Lja5g1634 985 SMART tpr_5 95 128 IPR019734 GO:0005515
Lja5g1634 985 SMART tpr_5 265 298 IPR019734 GO:0005515
Lja5g1634 985 SMART tpr_5 401 434 IPR019734 GO:0005515
Lja5g1634 985 SMART tpr_5 163 196 IPR019734 GO:0005515
Lja5g1634 985 SMART tpr_5 129 162 IPR019734 GO:0005515
Lja5g1634 985 SMART tpr_5 435 468 IPR019734 GO:0005515
Lja5g1634 985 SMART tpr_5 469 502 IPR019734 GO:0005515
Lja5g1634 985 SMART tpr_5 299 332 IPR019734 GO:0005515
Lja5g1634 985 SMART tpr_5 231 264 IPR019734 GO:0005515
Lja5g1634 985 SMART tpr_5 197 230 IPR019734 GO:0005515
Lja5g1634 985 SMART tpr_5 367 400 IPR019734 GO:0005515
Lja5g1634 985 ProSiteProfiles TPR repeat profile. 95 128 IPR019734 GO:0005515
Lja5g1634 985 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g1634 985 Gene3D - 589 765 - -
Lja5g1634 985 ProSiteProfiles TPR repeat profile. 129 162 IPR019734 GO:0005515
Lja5g1634 985 ProSiteProfiles TPR repeat profile. 299 332 IPR019734 GO:0005515
Lja5g1634 985 Pfam Tetratricopeptide repeat 404 432 IPR001440 GO:0005515
Lja5g1634 985 Pfam Tetratricopeptide repeat 163 194 IPR001440 GO:0005515
Lja5g1634 985 Pfam TPR repeat 307 347 - -
Lja5g1634 985 Pfam TPR repeat 241 279 - -
Lja5g1634 985 Pfam TPR repeat 442 483 - -
Lja5g1634 985 ProSiteProfiles TPR repeat profile. 163 196 IPR019734 GO:0005515
Lja5g1634 985 ProSiteProfiles TPR repeat profile. 265 298 IPR019734 GO:0005515
Lja5g1634 985 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SEC ISOFORM X1-RELATED 56 985 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1634 Lja-Chr5 17548665 17558202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1634 242 985 Glycosyltransferase AT3G04240 84.677 0.0 1372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1634 K09667 - gmx:100806661 1892.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1634 5 17548665 17558202 Lja5g1634 5 17548665 17558202 ECH