Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1626 ATGGGAGAAGACAAAGCAGAGATGGTGACTCCGGGAGAAGTGCTAGGCAGAAGCTCCGACGTCAAACCCGGAAGAGGAGCATACACCGCCGCTCACAACAAAACCGTCTACGCCTCCTTAACCGGCTTCCGCCGCACCACGCCTCCCGAACCGGACTCTCCTGACCAGAGACCCACTGTTGAAGTTACTGGTCACAAGGCTCATGGTCCTGTTCCTCAACCTGGATCTGTTGTCATTGCACGGGTCACCAAAGTGATGGCTAGGTCAGCTTCAGCTGATATCATGTGTGTTGGACCAAAGTCTGTTCGAGAAAAGTTTACTGGCATCATCAGGCAGCAAGATGTTAGAGCAACTGAGATTGATAAAGTAGAGATGCACTTATCTTTTCGTCCTGGTGACATCGTTAAAGCTCTTGTGCTTTCGCTTGGAGATGCACGGGCGTACTTTCTGTCTACTGCAAAGAATGAACTTGGTGTTGTTTCTGCAGAAAGCACTGCTGGTGCAACTATGGTTCCTATAAGTTGGACAGAGATGCAGTGCCCATTAACTGGTCAAATTGAACAAAGAAAGGTTGCAAAGGTTGCAAGCTGA 591 0.4924 MGEDKAEMVTPGEVLGRSSDVKPGRGAYTAAHNKTVYASLTGFRRTTPPEPDSPDQRPTVEVTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEIDKVEMHLSFRPGDIVKALVLSLGDARAYFLSTAKNELGVVSAESTAGATMVPISWTEMQCPLTGQIEQRKVAKVAS* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1626 196 Pfam Exosome component EXOSC1/CSL4 101 142 IPR019495 GO:0000178|GO:0003723
Lja5g1626 196 SUPERFAMILY Ribosomal L27 protein-like 8 45 - -
Lja5g1626 196 Gene3D - 8 62 - -
Lja5g1626 196 Gene3D - 65 196 IPR012340 -
Lja5g1626 196 ProSiteProfiles S1 domain profile. 75 154 IPR003029 GO:0003676
Lja5g1626 196 MobiDBLite consensus disorder prediction 1 74 - -
Lja5g1626 196 CDD S1_CSL4 70 160 - -
Lja5g1626 196 Pfam Exosome complex exonuclease RRP4 N-terminal region 8 47 IPR025721 -
Lja5g1626 196 SUPERFAMILY Nucleic acid-binding proteins 71 191 IPR012340 -
Lja5g1626 196 PANTHER 3'-5' EXORIBONUCLEASE CSL4-RELATED 3 195 IPR039771 GO:0000178|GO:0006396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1626 K07573 - gmx:100796154 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1626 5 17465014 17468214 Lja5g1626 5 17465014 17468214 ECH