Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1340 ATGGGGAACAAGTACTTGTGGCTGGTTTTCTGTTTGTGGGCTTTAACATGCTCACTTCTTCCTTCTTCCTCCTGTGGACTTATGCGAATTGGGTTGAAGAAAAAACCTCTAGATCTTCATAGTATTAAAGCAGCTAGAATGGAAAGAGAAAAGCTATTTGGAAGACCTGTGTTGGGTGCATATGATCAGAATGTTGGTAAGCGAACCGAAACTGATGATGGCTTAGTACCATTGAAGAATTATTTGGATGCGCAATATTATGGAGAGATTGCAATTGGCACACCCCCACAGACCTTTGATGTCATATTTGATACCGGTAGCTCAAACCTCTGGGTTCCATCATCAAAGTGCTACTTTTCTATTGCCTGCTACACCCATCATTGGTACAAGTCAAAGAAATCTAAAACATATACCAAAAATGGAACATCAGCTACAATAAGATATGGATCTGGAGGAATATCTGGTTTTTTCAGTCAAGATAACGTTAAAGTTGGTAATATTGTTGTCAAGGATCAGGATTTTATCGAGGCTACCCGAGAAGGAAGTATTTCCTTTGTGTTAGCGAAGTTTGATGGATTATTTGGGCTTGGGTTCCAGGAGATCTCAGTTGGGAATGCTGTGCCAGTATGGTACAATATGGTGGAACAAAATCTTGTGAGTGAGCAGGTGTTCTCTTTCTGGCTCAACGGGGATCCAAAAGCCAAAAAGGGCGGTGAGCTAGTTTTTGGTGGTGCTGATCCAAAGCACTTCAAAGGAAATCATACTTATGTTCCTGTTACTAGAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTTCGTTGGAGGTTTCTCAACAGGTTTTTGTGAAGGTGGCTGTGCTGCTATTGTGGACTCAGGAACATCTTTGCTTGCTGGTCCAACTACTGTTGTGACTGAAATTAACCATGCTATTGGAGCTGAAGGAGTTCTGAGTGTAGAATGTAAGGAAATTGTTGTTGAATATGGAGAGTTGATTTGGGATCTTTTGGTATCAGGGGTACGACCTGATGATGTATGCTCACAAGTTGGTTTATGTTTTGCCAAGAGGGATCAACCTAAGAGCGTCGGGATAGAGATGGTGACTGAAAAGGAACAGAAAGAGTTGACAGCTAAAGATACTGCTTTATGTAGTTCCTGTCAAATGCTTGTAGTTTGGATCCAGAATCAACTGAAACGAAAGTCAACCAAGGAGAGAGTATTCAGCTATGTAAATCAGCTTTGCGAGAGCTTGCCAAGTCCAAATGGAGAGTCGGTAGTAGACTGTAATAGTATTTCTCAGTTGCCAAACATTACTTTTACTATTGGAAATAAACTTTTCACCCTAGCTCCTGAGCAGTATATTTTGAAAACTGGAGAAGGCATTGCAGAAGTTTGCCTTAGTGGGTTTATTGCTTTTGACATTCCTCCTCCACGGGGTCCTCTCTGGATTCTTGGCGATGTTTTCATGAGGGTATATCACACCATCTTTGACTATGGGAATCTCCGAGTTGGTTTTGCTGAAGCTTCCTAA 1530 0.4131 MGNKYLWLVFCLWALTCSLLPSSSCGLMRIGLKKKPLDLHSIKAARMEREKLFGRPVLGAYDQNVGKRTETDDGLVPLKNYLDAQYYGEIAIGTPPQTFDVIFDTGSSNLWVPSSKCYFSIACYTHHWYKSKKSKTYTKNGTSATIRYGSGGISGFFSQDNVKVGNIVVKDQDFIEATREGSISFVLAKFDGLFGLGFQEISVGNAVPVWYNMVEQNLVSEQVFSFWLNGDPKAKKGGELVFGGADPKHFKGNHTYVPVTRKGYWQIEMGDFFVGGFSTGFCEGGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEIVVEYGELIWDLLVSGVRPDDVCSQVGLCFAKRDQPKSVGIEMVTEKEQKELTAKDTALCSSCQMLVVWIQNQLKRKSTKERVFSYVNQLCESLPSPNGESVVDCNSISQLPNITFTIGNKLFTLAPEQYILKTGEGIAEVCLSGFIAFDIPPPRGPLWILGDVFMRVYHTIFDYGNLRVGFAEAS* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1340 509 Pfam Saposin-like type B, region 2 320 352 IPR008138 -
Lja5g1340 509 Gene3D - 316 418 - -
Lja5g1340 509 SUPERFAMILY Acid proteases 7 508 IPR021109 -
Lja5g1340 509 CDD phytepsin 76 507 IPR033869 GO:0004190
Lja5g1340 509 ProSiteProfiles Saposin B type domain profile. 379 420 IPR008139 -
Lja5g1340 509 PRINTS Pepsin (A1) aspartic protease family signature 482 497 IPR001461 GO:0004190|GO:0006508
Lja5g1340 509 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
Lja5g1340 509 PRINTS Pepsin (A1) aspartic protease family signature 288 299 IPR001461 GO:0004190|GO:0006508
Lja5g1340 509 PRINTS Pepsin (A1) aspartic protease family signature 238 251 IPR001461 GO:0004190|GO:0006508
Lja5g1340 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Lja5g1340 509 Pfam Eukaryotic aspartyl protease 85 508 IPR033121 -
Lja5g1340 509 SUPERFAMILY Saposin 317 418 IPR011001 -
Lja5g1340 509 ProSiteProfiles Saposin B type domain profile. 316 356 IPR008139 -
Lja5g1340 509 Gene3D Acid Proteases 28 244 IPR021109 -
Lja5g1340 509 ProSiteProfiles Peptidase family A1 domain profile. 86 506 IPR033121 -
Lja5g1340 509 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 5 508 - -
Lja5g1340 509 SMART sapb_4 280 352 IPR008139 -
Lja5g1340 509 Pfam Saposin-like type B, region 1 382 418 IPR007856 GO:0006629
Lja5g1340 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 288 299 IPR001969 GO:0004190|GO:0006508
Lja5g1340 509 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 5 508 IPR001461 GO:0004190|GO:0006508
Lja5g1340 509 Gene3D Acid Proteases 246 508 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1340 Lja-Chr5 13475584 13480662 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1340 K08245 - gmx:547993 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1340 5 13475584 13480662 Lja5g1340 5 13475584 13480662 ECH
Lja1g0512 1 4630205 4634890 Lja5g1340 5 13475584 13480662 PCT