Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1260 ATGGGGTTGTCTTTCACCAAGCTGTTCAGCAGGCTCTTTGCCAAGAAAGAGATGCGTATTCTTATGGTAGGTCTCGATGCTGCGGGTAAGACTACCATTCTCTACAAGCTCAAGCTTGGAGAGATTGTCACCACCATTCCCACCATTGGGTTTAATGTGGAAACCGTGGAATATAAGAACATCAGCTTCACTGTCTGGGATGTCGGAGGTCAGGACAAGATCCGTCCACTGTGGAGACATTACTTCCAAAATACACAAGGACTTATTTTTGTGGTTGATAGCAATGACAGGGACCGTGCTGTTGAAGCTAGAGATGAGCTGCATAGGATGTTGAATGAGGATGAGTTGAGAGATGCCGTGCTACTAGTTTTTGCTAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCATTCTCTCCGTCAGCGTCACTGGTATATCCAGAGCACATGTGCCACGTCTGGTGAAGGGCTTTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG 546 0.456 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRAVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1260 181 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Lja5g1260 181 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 181 - -
Lja5g1260 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
Lja5g1260 181 TIGRFAM small_GTP: small GTP-binding protein domain 16 157 IPR005225 GO:0005525
Lja5g1260 181 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Lja5g1260 181 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Lja5g1260 181 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Lja5g1260 181 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Lja5g1260 181 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Lja5g1260 181 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 181 IPR024156 GO:0005525
Lja5g1260 181 Gene3D - 4 181 IPR027417 -
Lja5g1260 181 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Lja5g1260 181 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Lja5g1260 181 SMART arf_sub_2 1 181 - -
Lja5g1260 181 SMART rab_sub_5 18 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1260 Lja-Chr5 12654678 12656987 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1260 K07937 - sind:105163014 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1260 5 12654678 12656987 Lja5g1260 5 12654678 12656987 ECH
Lja1g0453 1 4021064 4023696 Lja5g1260 5 12654678 12656987 ECH
Lja1g0453 1 4021064 4023696 Lja5g1260 5 12654678 12656987 PCT