Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0989 ATGGCACTCTCGCGCCTTCGCCACCCTCTCATCTCTCGTTCCATTCGCCTCCTCTCTTCTTCCTCCACCAGATCCCTTTCTCGAACTTCTAATTCATGGAATTTTTCTGTGGGTGGTAATGAGAATCTAAGGCCGGCTACTTGGTCTAGGCTTACTGGTGTCTGTGATAGATGTTTGAAGTCAAAGTGGATTGATGTGAAATACTTCTCATCTTCAGATTCTTCACATTCAGTCCTTGGGATGCCAGCTTTATCTCCTACAATGACCCAAGGTAATATTGCAAAATGGAAGAAAAAAGAAGGAGAAAAGATAGAAGTGGGTGACGTACTATGTGAAATTGAAACTGACAAAGCTACAGTTGAATTTGAAAGTCTTGAAGAGGGATATTTGGCTAAGATATTGACACCTGAAGGTTCAAAGGACGTGCCTGTTGGACAACCAATTGCCATAACAGTTGAGGATGAAAGTGACATTCAAAATCTTCCTGCTTCCGCGGGGGGTGAGGCCGGGGTTGAAGAGAAGAAATCAACACATCAAGATGTCTCAGATGAGAAGAAACCGGAATCAACTTCTACTACAATTAATGCATCGGAACTTCCACCTCACGTCCTTCTTGAAATGCCAGCTTTGTCCCCAACAATGAACCAAGGAAACATTGTTAAATGGATGAAGAAAGAAGGAGACAAGATTGAAGTGGGAGACATATTATGTGAGATAGAGACAGACAAAGCTACCCTTGAATTTGAGACTCTTGAAGAGGGGTACTTGGCTAAGATACTTGCACCAGAAGGATCAAAAGAAGTGGCAGTTGGAATGCCTATTGCAATAACAGTTGAAGATGCAAGTGACATTGAAGCTATAAAGAATTCTATTGGCAGCAGCTCAGCAAGCCAACAGGAGAAGGCCACCCAACATGCCACTAAAAATGATGTCAAAGCACATAAAAACAAAACAACACGAATCAGTCCGGCTGCAAAGTTGCTAATTACAGAATATGGATTGGATGCGTCGACATTGAATGCAACTGGTCCTCATGGCACCCTACTGAAAGGGGATGTTCTTTCTGCAATAAAGTCAGGAAAACTGTCTCCAAAACCTGCTTCATCAAAAGCACATGCATCATCATCTCAAAGACATCAAGCTGCAGCTTCGCAAGAGTCAAAATCTGACTTAAAACAGTCAGATGCTTATGAAGATTTACCTAATAGTCAAATTCGCAAGGTTATTGCCAAGAGGTTGTTGGAATCAAAACAAAATACACCACACCTATATTTATCATCAGATGTTATACTGGATCCTCTTCTTTCCCTTCGTAAAGATCTTAAAGAGCAGTATGATGTGAAAGTTTCAGTGAATGACATTATTATCAAAGTTGTAGCAGCCGCACTTAGAAATGTACCAGAAGCAAACGCATACTGGGATGCTGAGAAGGGTGAGATCAATTTATGCGACTCTGTTGACATATGTATTGCAGTTGCCACTGAGAAGGGTTTGATGACTCCGATAATAAAAAATGCTGATCACAAGACAATATCTGCTATCTCCTCCGAGGTCAAGGAATTAGCAGCCAAGGCACGTGAAGGCAAGTTGAAGCCACATGAATTCCAAGGGGGGACATTTAGCATTTCAAACTTAGGAATGTTCCCGGTGGATAAATTTTGTGCTATTATAAACCCCCCACAGGCTTGCATTCTTGCTGTAGGGAAAGGCAACAAAGTTGTGGAACCAGTAATTGGAGCTGATGGAATTGAGAAGCCATCAGTTGCCAATAAGTTGAGCTTAACACTGTCTGCTGATCACCGCGTCTTTGATGGCAAAGTTGCAGGTGCGTTTCTCTCTGCTTTGAAATCAAACTTCAGCGACATCAGAAGACTTCTATTATAA 1884 0.4193 MALSRLRHPLISRSIRLLSSSSTRSLSRTSNSWNFSVGGNENLRPATWSRLTGVCDRCLKSKWIDVKYFSSSDSSHSVLGMPALSPTMTQGNIAKWKKKEGEKIEVGDVLCEIETDKATVEFESLEEGYLAKILTPEGSKDVPVGQPIAITVEDESDIQNLPASAGGEAGVEEKKSTHQDVSDEKKPESTSTTINASELPPHVLLEMPALSPTMNQGNIVKWMKKEGDKIEVGDILCEIETDKATLEFETLEEGYLAKILAPEGSKEVAVGMPIAITVEDASDIEAIKNSIGSSSASQQEKATQHATKNDVKAHKNKTTRISPAAKLLITEYGLDASTLNATGPHGTLLKGDVLSAIKSGKLSPKPASSKAHASSSQRHQAAASQESKSDLKQSDAYEDLPNSQIRKVIAKRLLESKQNTPHLYLSSDVILDPLLSLRKDLKEQYDVKVSVNDIIIKVVAAALRNVPEANAYWDAEKGEINLCDSVDICIAVATEKGLMTPIIKNADHKTISAISSEVKELAAKAREGKLKPHEFQGGTFSISNLGMFPVDKFCAIINPPQACILAVGKGNKVVEPVIGADGIEKPSVANKLSLTLSADHRVFDGKVAGAFLSALKSNFSDIRRLLL* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0989 627 CDD lipoyl_domain 207 276 - -
Lja5g0989 627 Gene3D - 200 303 - -
Lja5g0989 627 Gene3D - 70 176 - -
Lja5g0989 627 ProSiteProfiles Biotinyl/lipoyl domain profile. 76 152 IPR000089 -
Lja5g0989 627 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 198 622 IPR045257 GO:0006086|GO:0045254
Lja5g0989 627 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 74 194 IPR045257 GO:0006086|GO:0045254
Lja5g0989 627 MobiDBLite consensus disorder prediction 360 397 - -
Lja5g0989 627 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 101 130 IPR003016 -
Lja5g0989 627 SUPERFAMILY CoA-dependent acyltransferases 391 627 - -
Lja5g0989 627 MobiDBLite consensus disorder prediction 368 397 - -
Lja5g0989 627 SUPERFAMILY Single hybrid motif 79 167 IPR011053 -
Lja5g0989 627 Pfam e3 binding domain 320 354 IPR004167 GO:0016746
Lja5g0989 627 ProSiteProfiles Biotinyl/lipoyl domain profile. 202 278 IPR000089 -
Lja5g0989 627 MobiDBLite consensus disorder prediction 155 197 - -
Lja5g0989 627 TIGRFAM PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 205 619 IPR006257 GO:0004742|GO:0006090|GO:0045254
Lja5g0989 627 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 396 626 IPR001078 GO:0016746
Lja5g0989 627 PANTHER PYRUVATE DEHYDROGENASE PROTEIN X COMPONENT, MITOCHONDRIAL 198 622 - -
Lja5g0989 627 PANTHER PYRUVATE DEHYDROGENASE PROTEIN X COMPONENT, MITOCHONDRIAL 74 194 - -
Lja5g0989 627 MobiDBLite consensus disorder prediction 171 187 - -
Lja5g0989 627 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 313 359 IPR036625 GO:0016746
Lja5g0989 627 Gene3D - 381 627 IPR023213 -
Lja5g0989 627 SUPERFAMILY Single hybrid motif 203 295 IPR011053 -
Lja5g0989 627 MobiDBLite consensus disorder prediction 291 317 - -
Lja5g0989 627 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 227 256 IPR003016 -
Lja5g0989 627 Gene3D - 320 361 IPR036625 GO:0016746
Lja5g0989 627 CDD lipoyl_domain 81 150 - -
Lja5g0989 627 Pfam Biotin-requiring enzyme 205 276 IPR000089 -
Lja5g0989 627 Pfam Biotin-requiring enzyme 79 150 IPR000089 -
Lja5g0989 627 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 320 357 IPR004167 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0989 Lja-Chr5 9723398 9735343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0989 195 627 Acyl Lipid Metabolism Gene Families AT3G13930 42.451 4.33e-109 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0989 K00627 - gmx:100800280 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0989 5 9723398 9735343 Lja5g0989 5 9723398 9735343 ECH